4D9V,6UID,3GQS


Conserved Protein Domain Family
Yop-YscD_cpl

?
pfam16697: Yop-YscD_cpl (This model is not part of the current CDD release)
Inner membrane component of T3SS, cytoplasmic domain
Yop-YscD-cpl is the cytoplasmic domain of Yop proteins like YscD from Proteobacteria. YscD forms part of the inner membrane component of the bacterial type III secretion injectosome apparatus.
Statistics
?
PSSM-Id: 522504
Aligned: 20 rows
Threshold Bit Score: 90.383
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
4D9V_A          8 RFYQGKHRGVEVELPHGRCVFGSDPlQ-SDIVLSD-SEIAPVHLVLMVDEEGIRLTD--SAEPLLQEGLPVp---lGtlL 80  Yersinia pseud...
jgi:Psta_4415  34 EILRGKARSLVREVHSPVFLIGSAS-D-CDLVLGD-KSFPDAYAYLYLNASGISIRYlgEGPQLLVNDQPVe----GspL 106
Q56975          6 RFYQGKHRGVEVELPHGRCVFGSDP-LqSDIVLSD-SEIAPVHLVLMVDEEGIRLTd--SAEPLLQEGLPVp---lGtlL 78  Yersinia pestis
Q7N0V0          6 RFYRGLNKSIEVNLAEGRLAIGSDP-LqADIVLVD-EDVAPVHLILEVEPDSIRLLEwaGEAAPSQNGEPLs---pGatL 80  Photorhabdus l...
Q9I318          6 RFYSGLNQGAEVSLGEGRVALGSDP-LqADLVLLD-EGIAAVHLVLEVDAQGVRLLEwaEGCEPRQDGQAQv---aGaiL 80  Pseudomonas ae...
WP_014456853  205 RILNGPHKGKEFILNQNRILIGSGK-R-CEVLLSDyDKVEPVHAVLRAKNRELTLSSdlAGEQLIVNDTQVe----ErlL 278 Spirochaeta af...
Q2SH72          9 KLLSGPHAGAEMRLENRAYRVGAAD-D-CDIVLHD-KLLPDLAFSLIVEFGVVRLQr--DVESIALTHVGReiedlEiaI 83  Hahella chejue...
WP_011093646    5 RVLTGLHRGAALPLCGNAWRIGAAD-D-ADLVLYD-PGIAPYHGQLEKAADGWALS---AQDGTLSNAEGHsv-eyInaL 77  Pectobacterium...
WP_005763855    5 RVLNGQHQGAALPLIGEQWSIGSAQ-Q-QDLALDD-SGVESLHCRLQRLDDSWTLN---AEEGAVCDEEGHsq--aSvdL 76  Pseudomonas sy...
6UID_A          8 RFYSGLNQGAEVSLGEGRVALGSDPlQ-ADLVLLD-EGIAAVHLVLEVDAQGVRLLEwaEGCEPRQDGQAQv---aGaiL 82  Pseudomonas ae...
4D9V_A         81 RAGSCLEVGFLLWTFVAVG 99  Yersinia pseudotuberculosis
jgi:Psta_4415 107 AVGDRLEMGIFEFRLAEIH 125
Q56975         79 RAGSCLEVGFLLWTFVAVG 97  Yersinia pestis
Q7N0V0         81 QALARQEVGPLLWAFCDQQ 99  Photorhabdus laumondii subsp. laumondii
Q9I318         81 QALAGQTCGPLRWAFCDPQ 99  Pseudomonas aeruginosa
WP_014456853  279 KYEDVLKIGTAKL-LYKQE 296 Spirochaeta africana
Q2SH72         84 EPYGVYSLGLLHFCFGPAD 102 Hahella chejuensis KCTC 2396
WP_011093646   78 PPGTPFALGQIWLCIVAAD 96  Pectobacterium atrosepticum
WP_005763855   77 TLNTAFMLGSVWLCVSPAG 95  Pseudomonas syringae group
6UID_A         83 QALAGQTCGPLRWTFCDPQ 101 Pseudomonas aeruginosa
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap