6LP9


Conserved Protein Domain Family
CNV-Replicase_N

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pfam16688: CNV-Replicase_N (This model is not part of the current CDD release)
Replicase polyprotein N-term from Coronavirus nsp1
CNV-Replicase_N is the N-terminal domain of a family of ssRNA positive-stranded porcine transmissible gastroenteritis coronaviruses. the domain folds into a six-stranded beta-barrel fold with a long alpha helix on the rim of the barrel. This fold is shared with SARS-CoV nsp1.
Statistics
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PSSM-Id: 522496
Aligned: 3 rows
Threshold Bit Score: 218.709
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6LP9_B    8 MSSKQFKILVNEDYQVNVPSLPFRDVLQDIKYCYRNGFDGYVFVPEYRRDLVDCNRKDHYVIGVLGNGISDLKPVLLTEP 87   Feline infectious p...
Q98VG9    1 MSSKQFKILVNEDYQVNVPSLPFRDALQEIKYCYRNGFDGYVFVPEYRRDLVDCNRKDHYVIGVLGNGISDLKPVLLTEP 80   Feline infectious p...
Q98VG9    1 MSSKQFKILVNEDYQVNVPSLPFRDALQEIKYCYRNGFDGYVFVPEYRRDLVDCNRKDHYVIGVLGNGISDLKPVLLTEP 80   Feline infectious p...
6LP9_B   88 SVMLQGFIVRADCNGVLEDFDLKIARTG 115  Feline infectious peritonitis virus
Q98VG9   81 SVMLQGFIVRANCNGVLEDFDLKFARTG 108  Feline infectious peritonitis virus (strain 79-1146)
Q98VG9   81 SVMLQGFIVRANCNGVLEDFDLKFARTG 108  Feline infectious peritonitis virus (strain 79-1146)
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