3P9A


Conserved Protein Domain Family
GP3_package

?
pfam16677: GP3_package (This model is not part of the current CDD release)
DNA-packaging protein gp3
DNA-packaging protein gp3 (terminase small subunit) is involved in DNA packing in bacteriophage. it contains a channel where DNA is bound and passed to DNA-packaging protein gp2 (terminase large subunit).
Statistics
?
PSSM-Id: 522486
Aligned: 11 rows
Threshold Bit Score: 104.05
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3P9A_C        17 GRNPKFEspEALWAACCEYFEwv--------------------------------eANplwemkafsyqgeviqePIAKM 64  Lederbergvirus P22
Q7N321         9 GCPSKLN--DELIAKARDYLYg----------------------------------GY-----------------ESVGD 35  Photorhabdus la...
WP_014108595   1 MRPTKYC--KKVQAKADWYAEg----------------------------------GY-----------------LDCGD 27  Glaciecola nitr...
Q9T1T1         9 GRPSKLT--VSL-EKAKAYLMg----------------------------------EY-----------------KTVGD 34  Hamiltonella ph...
WP_015395750   8 GRPRAFNsqEELEQKIMEYWQrce-----------------------------------------------------qnN 34  Clostridium sac...
WP_015752040  12 GRPPSFEspEEMATSIDEYFLrcd-----------------------------------------------------aeN 38  Desulfohalobium...
CCX38750       4 KRPKRSL--RALKAAAEAYLRdcd-----------------------------------------------------qaQ 28 
P04893        17 GRNPKFEspEALWAACCEYFEwveanplwemk--------------------------------afsyqgeviqePIAKM 64  Lederbergvirus P22
WP_007754913  17 GRSKRFAspEQLWEAACEYFAycdrtpwkvik--------------------------------nktkgeikekeENPTQ 64  Bacteroides fin...
CCZ05907      16 GRDKLFSdaETLWREACLYFDwcdrhplkkae--------------------------------lvkykgayeeaGVTLA 63 
WP_015755472  17 GRDRIFDspEDMAEQINEYFQwcllnplmeaqvikgrvieederdgevvkvtknheMV-----------------EVPKM 79  Robiginitalea b...
3P9A_C        65 RAMTITGLTLFIDVT-LETWRTYr--lReDLS------------EVVTRAEQVIYDQKFSGAAADLLNANIIARDL---- 125 Lederbergvirus P22
Q7N321        36 VVPSVAGLACYLAIA-RSTAYEYgkqsS-EFS------------DILEGIGAMQENKLINKGLTGDFNSTIAKMMLtk-h 100 Photorhabdus la...
WP_014108595  28 AVPSQAGLACELSVT-RQTLVNWkeqhP-KFL------------DTLDLISVVQERLSLSGGLKGEMNSAIVKLLLan-h 92  Glaciecola nitr...
Q9T1T1        35 VVPNIAGLACYLNIS-RSTIYEWssssNvEFS------------DIVEGILALQENKLLNSGLKGEFNPTITKLMLsk-h 100 Hamiltonella ph...
WP_015395750  35 KPYTLSGLALWIGID-RRTLYNYst--rdEFF------------PTIKKAKDIVEASMEERALTGDNNVTFSIFALknnf 99  Clostridium sac...
WP_015752040  39 RPYTVPGLARALGFStRKSLWDYeg--kpEFV------------NTIKRAKLRIEEQRSEQLIMRQSNCTGLIFDLknnf 104 Desulfohalobium...
CCX38750      29 RFPTVTGLALALGFSgREEMERFaareGgPVA------------NLLEWARSHVEEETLQ-AVYRRDTSSGARFILqssf 95 
P04893        65 RAMTITGLTLFIDVT-LETWRTYr--lReDLS------------EVVTRAEQVIYDQKFSGAAADLLNANIIARDL---- 125 Lederbergvirus P22
WP_007754913  65 RPYSLTGLMAYLDVS-KSFWNDFkkgsHeDFS------------VVITRIENVIRTQQLEGAIVGAFNPNIVSRII---- 127 Bacteroides fin...
CCZ05907      64 RAYTVDGLTRYLGVS-GSYFRTAksrlReKIErggaalseisllETIELIEQTVRTQQIEGAAAGIFSAGLVARLN---- 138
WP_015755472  80 RPFTLEGLCNYIDIG-VSTFKDYe--kRkDFS------------WVTTRARQIIDNQQFEGAASGFLNPSIIARKL---- 140 Robiginitalea b...
3P9A_C       126 GLKEQ--SQV 133 Lederbergvirus P22
Q7N321       101 GYSDK--QEI 108 Photorhabdus laumondii subsp. laumondii
WP_014108595  93 GYSEK--KAL 100 Glaciecola nitratireducens
Q9T1T1       101 GYADK--QET 108 Hamiltonella phage APSE-1
WP_015395750 100 GWRDK--QEI 107 Clostridium saccharoperbutylacetonicum
WP_015752040 105 GWQDKfdQEV 114 Desulfohalobium retbaense
CCX38750      96 GYGEK--NTH 103
P04893       126 GLKEQ--SQV 133 Lederbergvirus P22
WP_007754913 128 GLSDK--QKV 135 Bacteroides finegoldii
CCZ05907     139 GLAEN--TNV 146
WP_015755472 141 GLADH--QKV 148 Robiginitalea biformata
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap