Conserved Protein Domain Family
LSM_int_assoc

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pfam16605: LSM_int_assoc (This model is not part of the current CDD release)
LSM-interacting associated unstructured
LSM_int_assoc is a family found largely on eukaryotic SART3 proteins just upstream of their C-terminal LSM-interacting domain. This region is natively unstructured.
Statistics
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PSSM-Id: 522432
Aligned: 13 rows
Threshold Bit Score: 59.3849
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_028904615 858 NPPQRKFPDRPEAGKASA-PMVPRQIYGARGKGRTQLSLLPRALHRPSL---KTENGTVPNQ 915 
7_pfamImport   1 NPPQRKVPEKPEARRASGsALLPRQVYGARGKGRTQLSLLPRALQRPSAataQAGHGRATPA 62  
XP_054298438 877 NPPQRKVPEKPETRKAPGgPTLLPQTYGARGKGRTQLSLLPRALQRPGAaapQAENGPAAAP 938 
XP_007490022 892 NPPQRKLPDRPEAGRALG-AMVPRQVYGARGKGRTQLSLLPRALQRPNNpgpKTENGTFQTP 952 
XP_006640406 854 NPPQRNVTGKPESSRLLG-SMIPRQLYGARGKGRTQLSMFPRALHRQPApqaKAENGTLQSQ 914 
B3DJT0       861 NPPGRRMKDEAAPSRFLG-AAMPRQLQGARGKGRTQISLLPRSLYRQSTpdaKAENGTISAP 921  zebrafish
2_pfamImport   1 NPPRRNTMDNAGSSRLA--VDVPRQVFGSRGRGRTQLSLLPRSLHRQSGpggKAENGAAAAE 60  
4_pfamImport   1 NPPRRNVMDKPGAGRPM--DLKSRQAYGARGKGRTQLSMVPRSLHRQNLplkQVENGTSAAQ 60  
6_pfamImport   1 NPPRRNATDKPGSSRPTG-DAMPRQVYGARGKGRTQLSMLPRSLHRQSApagKVENGSAADG 61  
3_pfamImport   1 NPPRRSVNEKPGSSRPVT-DMMPRQNYGSRGKGRTQLSLLPRSLHRQAAgvgKVENGTAAEK 61  
XP_038043295 855 NPPLRKLPDKPEAGRASQ-FAVPRQIYGARGKGRTQLSMMPRALQRQSNpvaKAENGMVQNS 915 
5_pfamImport   1 NPPARKQPEAAERA-----PQPPRQSYGARGKGRTQLAMVPRALQRQSNppaKAENGTAQNP 57  
XP_058137473 763 NPPQRKVPEKPETRKAPGgPMVPRQMYGARGKGRTQLALLPRALQRPSAtvpQAENGPAPrp 824  nine-banded armadillo
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