Conserved Protein Domain Family
Cas9-BH

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pfam16593: Cas9-BH 
Bridge helix of CRISPR-associated endonuclease Cas9
Cas9-BH is the bridge helix between the NUC and the REC lobes of Cas9 - the CRISPR-associated endonuclease Cas9. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defence against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.
Statistics
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PSSM-Id: 495955
Aligned: 20 rows
Threshold Bit Score: 27.5753
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014262094    50 RRLQRGNRRRLER---KKQRIDLLQEIFSPEICKID 82   Filifactor alocis
10_pfamImport    1 RTSFRSMRRRRERqllRRERLHRVLMLLGFLPQHYA 36  
2_pfamImport     1 RRGHRVNRRRIQR---RRDRLNLLEEIFSEEMAKVD 33  
11_pfamImport    1 RRLSRSTRRRYDR---RRQRIHYLQEMLATMVLPID 33  
WP_014165808    61 RTDYRSKRKLIQRfllRRERLHRVLNVLDFLPKHYA 96   Flavobacterium columnare
WP_014791819    62 RTKQKGVRKLYERkklRRERLHRVLNILGFLPEHYS 97   Ornithobacterium rhinotracheale
7_pfamImport     1 RRGFRSSRRRTQR---KRERLKLLEMLFDEEISKID 33  
8_pfamImport     1 RRGFRTARRRAQR---KRQRILWLQMLFNEEISKKD 33  
WP_012290141    52 TRIFRSGRRRNDR---KGMRLQILREIFEDEIKKVD 84   Finegoldia magna
WP_013252099    55 aRIHRSQRRRYVR---RRWRLDLLQSLFQDEVSKVD 87   Olsenella uli
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