Conserved Protein Domain Family
Astro_capsid_p2

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pfam16580: Astro_capsid_p2 (This model is not part of the current CDD release)
C-terminal tail of astrovirus capsid projection or spike
Astro_capsid_p2 is a family of turkey astroviral spike projections. These are globular domains on the surface of the viral capsid. Astroviruses cause diarrhoea in a variety of mammals and birds, and are small, non-enveloped, single-stranded RNA viruses. The spike carries three conserved patches on its surface which could be candidates for avian receptor-binding sites.
Statistics
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PSSM-Id: 522420
Aligned: 9 rows
Threshold Bit Score: 455.504
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q1L583         7 AEDQYTPWFVYNFQGQRVSTSESGIFCLSAIPSADSKSRYNNQINSPTVGYRNEGGAGSSFALDNASWWSILDVTQTGVI 86  Turkey astrovir...
Q5UAH3       431 ADDQFTPYFVYDFQGKRVSTTETGVFCLFSIPAADSKSRYNSPMTNVSIGYRSDSGTGVSFALDNASWWNILDVTQTGVI 510 Turkey astrovir...
Q1L589         7 AEDQYTPHFVYDFQGTRVSTTESGVFCLSSIPSADSKSRYNNQINSPSIGYKNEGGTGTSFAMDSAPWWSILDVTQTGVI 86  Turkey astrovir...
Q1L586         7 ADDQYTPHFVYDFQGARVSTAESGVFCLAAIPAATTSSRYNGQITSPSIGYKNASGTGTSFSLETASWWNILDVTQTGVL 86  Turkey astrovir...
Q1L591         7 ADDQYTPYLVYDFQAGRVSTAETGVFCLATIPIAATSSRYNGLISTPSIGYKSDSGSGTSFQLDEASWWNILDVTQTGVL 86  Turkey astrovir...
3_pfamImport   1 ADDQYTPFFVYNFQGERVSTAETGTFCLAAIPNATASSRYNGQISTPSIGYKSDSGAGVSFQLDAADWWNILDVTQTGVL 80 
1_pfamImport   1 AEDQYTPYLVYDFQGRRVSTAETGTFCLAGIPIAATSSRYNGLISSPSIGYKGDSG-GVSFRLDEASWWNILDVTQTGVL 79 
Q1L585         7 ADDQYTPHLVYDFQGNRVSTAETGVFCLASIPAATTSSRYNGQITSPTIGYKNASGTGTSFSLDEASWWNILDVTQTGVL 86  Turkey astrovir...
Q9Q3G5       431 ADDQYTPYFVYNFQGERVSTTETGVFCLAAIPAATTSSRYNNQITTPSIGYRNASGTGTSFLLDAASWWNILDVTQTGVL 510 Turkey astrovir...
Q1L583        87 FGQPRLGVGVIQTMKTPKQHITDFTEPAVKKYYPGTTNLDQT--LKDRMKLTEGDPVISMGDVTGRRAALFYRTSDDRFI 164 Turkey astrovir...
Q5UAH3       511 FGQAKYGVGVIQTMKTLKQHIKDFTEPAVKKYYPNTTNIDQE--LKNRLNLAEGDPVISIGDTTGRRAALFYRSSNERFV 588 Turkey astrovir...
Q1L589        87 FGQPRLGVGVIQTMKTLKQHITDFTEPAVKKYYPGTTNLDQT--LKDRMKLTEGDPVISMGDVTGRRAALFYRTSDERFI 164 Turkey astrovir...
Q1L586        87 FGQPKLGVGVTQTMKTLKQHIKDYAEPAIQKYYPGTTNIDDR--LKQRMNLAEGDPVISMGDTNGRRAALFFRTSDEKYI 164 Turkey astrovir...
Q1L591        87 FGQPKLGVGVIQTMKTLKQHIKDYTEPAIKRYYPNTTNLDNRdvLKQRMNLAEGDPVISMGDTNGRRAALFYRTSDERYI 166 Turkey astrovir...
3_pfamImport  81 FGQPKLGVGVIQTMKTLKQHIKDYTEPAIKRYYPGTTNLDNGdvLKQRMKLTEGDPVISMGDTNGRRAALFYRTSDERYL 160
1_pfamImport  80 FGQPKLGVGVIQTMKTLKQHIKDYTEPAIKRYYPGTTNLDNSnvLKQRLDLAEGDPVISMGDTSGRRAALFYRTRDERYI 159
Q1L585        87 FGQPKLGIGVMQTMKTLKQHIRDYTEPAIKKYYPGTTNIAEE--LKQRMKLAEGDPVISMGDTTGRRAALFYRTSDERYI 164 Turkey astrovir...
Q9Q3G5       511 FGQPRLGVGVMQTMKTLKQHIKDYTEPAIQKYYPGTTNLDEQ--LKQRLNLAEGDPVISMGDTNGRRAALFYRTSDEKYI 588 Turkey astrovir...
Q1L583       165 MLISTTGDPGSQFESLKTSTFWNWSLSDNKTEFLNRLRTIQYANAGtgglQQEEHHGDSDDDGLSDVTSLFEQADLEDET 244 Turkey astrovir...
Q5UAH3       589 LLFSTADDPGPSYASLKMLAFWNWSLSDDKNAFLANLRTVQFAGLC----ESEVPQCDSDDDDLSDVTSLFEQADLGDET 664 Turkey astrovir...
Q1L589       165 MLISTTDDPGSQFESLKVTTFWNWSLSDNKSAFLARLRTIQYANAGtgelQQEXSHCDSDDDGXSDVTSLFEQADLEDET 244 Turkey astrovir...
Q1L586       165 LFFSTTEDPGAEYQNLKMLYFWNWSYSDNKQQFLDHLRTVQFANLD----DSQPALCDSDDDGLSDVTSLFEQADLEDET 240 Turkey astrovir...
Q1L591       167 LFFSTPEDPGQEYQSLKVLYFWNWSYSDNKQQFLEHLRTVQFANRD----DSQLTPCDSDDDDLSDVTSLFEQADLGDET 242 Turkey astrovir...
3_pfamImport 161 LFFSTPSDPGAEYQNLKMLYFWNWSYSDNKQQFLSHLRTVQFANRD----DSQPALCDSDDDGLSDVTSLFEQADLEDET 236
1_pfamImport 160 LFFSTPSDPGPEYQHLKMLYFWNWSYSDSQQDFLGHLRTVQFANRD----DSQPAHCDSDDDGLSDVTSLFEQADLEDET 235
Q1L585       165 LFFSTTGDPGAQFENLKMLYFWNWSYSDTKQQFLDHLRTVQFANAD----DSQPVPCDSDDDDLSDVTSLFEQADLGDET 240 Turkey astrovir...
Q9Q3G5       589 LFFSTTEDPGAQYQNLKMLYFWNWSYSDTKQQFLDHLRTVQFANLD----DSQPAPYDSDDDDLSDVTSLFEQADLGDET 664 Turkey astrovir...
Q1L583       245 DFKFKMSIQTS 255 Turkey astrovirus 2
Q5UAH3       665 DFKFNMSIQTS 675 Turkey astrovirus 3
Q1L589       245 DFKFKMSIQTS 255 Turkey astrovirus 2
Q1L586       241 DFKFKMSIQTS 251 Turkey astrovirus 2
Q1L591       243 DFKFNMSIQTS 253 Turkey astrovirus 2
3_pfamImport 237 DFKFKMSIQTS 247
1_pfamImport 236 DFKFKMSIQTS 246
Q1L585       241 DFKFNMSIQTS 251 Turkey astrovirus 2
Q9Q3G5       665 DFKFNMSIQTS 675 Turkey astrovirus 2
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