Conserved Protein Domain Family
HlyD_D23

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pfam16576: HlyD_D23 (This model is not part of the current CDD release)
Barrel-sandwich domain of CusB or HlyD membrane-fusion
This entry represents a domain comprising the combined domains 2 and 3 of the membrane-fusion proteins CusB and HlyD. It is formed by a barrel-sandwich domain which is inserted in a RIFT-like domain. The barrel-sandwich domain, itself, contains an insert of a three-helical bundle subdomain. CusB and HlyD proteins are membrane fusion proteins of the CusCFBA copper efflux system in E.coli and related bacteria. The whole molecule hinges between D2 and D3. Efflux systems of this resistance-nodulation-division group - RND - have been developed to excrete poisonous metal ions, and in E.coli the only one that deals with silver and copper is the CusA transporter. The transporter CusA works in conjunction with a periplasmic component that is a membrane fusion protein, eg CusB, and an outer-membrane channel component CusC in a CusABC complex driven by import of protons.
Statistics
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PSSM-Id: 522417
Aligned: 109 rows
Threshold Bit Score: 206.597
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CBK41532        59 PIQPELVLVGKVAYGEDRYSKISSPLQGR--VVEVRAK-LGDRVEAGATLLVIDSSDITAAYSEFVKEASeleystraqe 135
jgi:Echvi_2437 100 MASNHLTLSGTIEVDERNVKSVSANFDGR--IDDLYVAfTGQEVKQGQRLARIYSPDLIAAHRELLEAKK---------- 167
WP_008200386   106 GANKSVKLSGKVQADERLNYTQTSHIPGR--IEELKVNfTGEFISKGQVIATIYSPELTTAQNELLQAAK---------- 173 Algoriphagus ...
WP_013444537   119 QPSKDVRLYGKVQADERLLQNQVAHIGGR--IEKLFVNfTGEPVRKGQLLAMIYSPDLITAQQELIEAAK---------- 186 Paludibacter ...
WP_012647559   126 EFSTETVAAGRVSWDERRLNRVSSRVQGR--VERLDVNfTGARVRAGEPLLDIYSPDLISAQKEYLLAID---------- 193 Geotalea dalt...
Q74DI5         110 SLQKEITATGIVAYDQRRQAKVTAWVAGR--IDRLNVNaVGDFVSRGRPVAELYSPDLVSAQQEYLLALK---------- 177 Geobacter sul...
WP_011937033   113 PLNKEINAVGIVQYDQARQAKVTAWVAGR--IDRLFVNtVGSYVSKGKPVAEVYSPDLVSAQQEYLLALK---------- 180 Geotalea uran...
WP_011733760   118 SLNKEINAVGIVQFDQSRQAKVTAWIAGR--IDKLNVStVGAYVSKNRPVAEVYSPDLMSTQQEYLLAIK---------- 185 Pelobacter pr...
WP_011736761   116 SLNKEITASGIVQFDQSRQAKVTSWIAGR--IDRLNVNsVAASVSRNRPVAELYSPELVATQLEYLLALK---------- 183 Pelobacter pr...
WP_015245890   143 PMSETLTTVGTVAYDERKQAQVASQLKGMarVETLTVNfTGMAVKAGDTLGELSSPDLSQAIQELLLAKR---------- 212 Singulisphaer...
CBK41532       136 lakelfATKALALKDlkqaendlikaraEFRRAKERLLSLRIPAQELEKPLAQQRITSRFEMKSPLTGTVVERAVTPGQS 215
jgi:Echvi_2437 168 ------ATGISPK---------------LYEAAKQKLKQWQLTDAQITKMANDEDYQPHFDIYAATSGVVTDRKVAAGDY 226
WP_008200386   174 ------IQDSQPE---------------LFQAAKNKLKNWKISDAQISEILNNNTILRNFPIRANVSGYVTEKLANLGDH 232 Algoriphagus ...
WP_013444537   187 ------SKQTQPE---------------IYHAAMEKLMQWMLTEKQIAQIERSGKVKTNFEVYSNTSGIVTARRVNTGDH 245 Paludibacter ...
WP_012647559   194 ------GAERAKESPlpesr---smmegLRDASRSRLKVWGVSDQQIAELERSRQPKKVVSIKSPVTGVVTERLVTTGQY 264 Geotalea dalt...
Q74DI5         178 ------SRDRLKDSPiasis---qggegLVASARQRLLLMGVKEQQIAGLEKAGQPNIKLPVYTPLSGVVIEKIAIEGQY 248 Geobacter sul...
WP_011937033   181 ------SREQLKNSPiqsia---qggegLVASARQRLILLGVKDEQLAGLEKSGQPNIRLSIYTPLSGIVIEKIALEGQY 251 Geotalea uran...
WP_011733760   186 ------SRDQLKNSPipsis---qngegLVASAKQRLMLFGVKESQIAALEKAGKPNIRLPIYTPLSGIVIEKMVQQGQY 256 Pelobacter pr...
WP_011736761   184 ------SRDQLKDSPipsis---qngegLVASARQRLLLFGVRESQIAALEKAGKPNIRLPIYTPLSGVVIEKMVQQGQY 254 Pelobacter pr...
WP_015245890   213 ------ASGDPARTPngsgrsgaadgleLARLAEAKLRLLGATQAQVNAIVARGKGDEKLPIIAPMGGVVVKKNVVQGQY 286 Singulisphaer...
CBK41532       216 VgsDAGQVLFTVADLDRLQVVADVYERDLALVKVSQVGRINVEAYPGTDFASVVASIGDVVDPNTRTIKVRAWVDNRDQR 295
jgi:Echvi_2437 227 V--SRGQVLFEITNLNKVWVMLDAYEQGLGQISAGDQIQFSVNALPGEEFSAKVAFIDPVVSADSRSAKVRAEVNNFSGK 304
WP_008200386   233 L--QQGQAIYEVADLSRVWVLFDIYETDLSWIKVGDEIEYSIQSLPGETFTGKISYIDPLIDPASRVAKARIEVSNPKGK 310 Algoriphagus ...
WP_013444537   246 V--SEGSVLYDIANLSQVWVLFDAYESDLPFLKVGNTISFTLQALPGTNFSAKIQFIDPVIDPVNRVAKVRVEVSNVGGK 323 Paludibacter ...
WP_012647559   265 V--NEGSPLFSVGSLSGVWIFAELYENDLGRIETGTPALVTTEAFPGKVFQGRVAFVDPVVNPETRTLKVRVDLDNRAGL 342 Geotalea dalt...
Q74DI5         249 V--NMGDPLFTIADLSTVWVEAEIYESDVSFVKVGQRVEVTSASWPGKTFAGRISLVYPFLDPKTRTIKARIELSNPGLK 326 Geobacter sul...
WP_011937033   252 V--NTGDPLFNIADLSSVWVEVEVYENEFSFIKIGQAVDIVSQSYPGKTFRGRVAFIYPFLDPKTRTVKVRVEIPNPGLK 329 Geotalea uran...
WP_011733760   257 V--NTGDVLFSIADLSTVWVEVEVYENEFPNIHIGQQVEIRSQSFPGKPFTGRVAFIYPFLDPKTRTVKARVAMPNPGMK 334 Pelobacter pr...
WP_011736761   255 V--NVGDVLFTIADLSTVWIELDIYEPDLAIVRVGQRVEIHSPSFSGGTLSGRIALVNPFLDPRSRTVKARVEMANPGMR 332 Pelobacter pr...
WP_015245890   287 V--TEGQAMFELADLSTVWVKAHVYEDQVGLVRVGQSVEATVQADPSRRFAGQVAFIQPRVDPATRTIEVRYDLDNRDQG 364 Singulisphaer...
CBK41532       296 LKPEMFA 302
jgi:Echvi_2437 305 LKPGMFV 311
WP_008200386   311 FKPEMFA 317 Algoriphagus machipongonensis
WP_013444537   324 LKPEMFA 330 Paludibacter propionicigenes
WP_012647559   343 LKPEMFV 349 Geotalea daltonii
Q74DI5         327 LKPDMFV 333 Geobacter sulfurreducens
WP_011937033   330 LKPDMFV 336 Geotalea uraniireducens
WP_011733760   335 LKPDMFV 341 Pelobacter propionicus
WP_011736761   333 LKPDMFV 339 Pelobacter propionicus
WP_015245890   365 LRPGMFA 371 Singulisphaera acidiphila
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