8HMY,4OHW


Conserved Protein Domain Family
CLP1_N

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pfam16573: CLP1_N (This model is not part of the current CDD release)
N-terminal beta-sandwich domain of polyadenylation factor
This family is the short N-terminal domain of the pre-mRNA cleavage complex II protein Clp1. Clp1 function involves some degree of adenine or guanine nucleotide-binding and participates in the 3'-end-processing of mRNAs in eukaryotes.
Statistics
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PSSM-Id: 522414
Aligned: 131 rows
Threshold Bit Score: 67.9555
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
8HMY_E        37 LERETELRFEVEASQSVQLELL-----T---G----MAEIFGTELTRNKKFTFDaGAKVAVFTW--HGCSVQ-----L-S 96  human
EED43984      18 IARNKDFRIEVNELQKLKIKIV-----K---G----LAELKGAELVNNKWYLFT-DIKTSIFTF--TGCDLEiegecE-- 80 
EJW04759       5 LLKHHEFRFEVSD-KPVKIRVV-----K---G----HCEIKGEEMILGKCYRFL-DCKTFLFAH--EDSVLE-----I-- 61 
XP_001019928  18 VEKMREFSFNINNEDGLKLFLK-----E---G----TAEIFGRELPQYTIQQFQkGDRFSIFTW--TGCVLY-------- 75 
XP_002139175  17 IEAGNELRIIAHSNQPCSIRLYspalsStndGaimsSAEIFGAELPPDVEMNIApSSRLAIYTW--HGCIIQ-----I-K 88 
A5DJW8        26 LEGKSEWRFEVPFKTILSLKVT-----E---G----VGEIFGTELPLNVPVQLT-GVKYALYAPlpEGCTVEys--tRiN 90  Meyerozyma guil...
XP_002617501  11 LDEGCEWRFEVPFKTILTLKVV-----D---G----IGEIFGTELPNDTEVHLT-GAKAAVYAPlpAGCRFQys--cSlN 75 
CCE81129      29 IPEGSEWRFEVPFKLTLKLIVV-----E---G----VGEIFGTELPNNVQLQLS-GVKYAIYSPleAGCKVKys--tVpN 93 
XP_006684715  24 IPENHEWRFEVPFKLSLSLKIL-----D---G----IAEIFGTELPINTDLSFS-GVKYSVYAPlpQGCKLQyt--lKiN 88 
XP_654388     13 VNKGKELRIITGEN--FTFKIL-----K---G----QMEWNGCELSNGTAQSIQqNTWLSFYAI--EESDVE-----Ivn 71  Entamoeba histo...
8HMY_E        97 GRTE---------VAYV-------SK-DTPMLLYLNTHTALEQMRRQA 127 human
EED43984      81 -------------LAYI-------GE-RSSFPKLFDVYNNIVQSknmk 107
EJW04759      62 --EGdf------dASYE-------TD-NTNVLQLLRFFIKINGIKKEA 93 
XP_001019928  76 -------------LEYMshsdffqSTdESQYPIYANINQYLHEMRSQA 110
XP_002139175  89 GLVQ---------QEYQ-------GI-NKSMKDYLEVIQVLDSRREYA 119
A5DJW8        91 RDQApgssdstdiSEYI-------SE-DTPMNQYINLHMALESYRQET 130 Meyerozyma guilliermondii ATCC 6260
XP_002617501  76 KENVnissedakvSEYV-------SD-ESAVPAYTRLHFALDVKRQQA 115
CCE81129      94 NNFAastsddsevSEYI-------SE-ETPMNQYLNLHLFLEQKRQKI 133
XP_006684715  89 KEQSnttnepasiSEYI-------SSdTLSMKQVVNLHFYLEKKRQEA 129
XP_654388     72 -----------skSCYI-------GI-KSVVEEYYSIFNNLNDNRSHf 100 Entamoeba histolytica HM-1:IMSS
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