Conserved Protein Domain Family
GramPos_pilinD1

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pfam16555: GramPos_pilinD1 
Gram-positive pilin subunit D1, N-terminal domain
GramPos_pilinD1 is the first subunit domain of Gram-positive pilins from Strep.pneumoniae. There are three major pilin subunits that form the polymeric backbone of the pilin from S. pneumoniae, constructed of three Ig-like, CnaB, domains along with a crucial N-terminal domain, D1. The three IG-like domains are stabilised by internal Lys-Asn isopeptide bonds, but this N-terminal domain makes few contact with the rest of the molecule due to the different orientation of its G beta-strand. Strand G of D1 also carries the YPKN motif that provides the essential Lys residue for the sortase-mediated intermolecular linkages along the pilus shaft. Gram-positive pili are formed from a single chain of covalently linked subunit proteins (pilins), usually comprising an adhesin at the distal tip, a major pilin that forms the polymer shaft and a minor pilin that mediates cell wall anchoring at the base.
Statistics
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PSSM-Id: 495926
Aligned: 32 rows
Threshold Bit Score: 93.6672
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012290215  29 ETTKTVTLHKILm-dKTTFGK-------FTeg-ttGKDGTeydgnkitnvKDFFAgkeakeGSAKEIAGVFFAWQVKGKE 99  Finegoldia magna
Q8E0S9        45 PAKTTVNIYKLQa---dSYKSeitsnggIE-----NKDGEvi------snYAKLG------DNVKGLQGVQFKRYKV--- 101 Streptococcus a...
WP_023055265 103 TGTTDLGNNKTGk-aEDVFPG-------YK-----GLDGTefrgq-eldiVKYFG------SDSKPIDGVAFRIYEEYKG 162 Peptoniphilus
WP_005396811  36 RKTNKVVLHKLLm-sESELSDwdpesitEE-----KYDGTqti----qelANNTG------KDLKEIAGVYFAFQTEAGK 99  Helcococcus kunzii
Q8DYR6        32 ATTNTVTLHKILq-tESNLNK-------SNfpgttGLNGKdykggaisdlAGYFG------EGSKEIEGAFFALALKEDK 97  Streptococcus a...
WP_005957478  32 GETETLTVHKILmtkEGLKNHdv----nKK-----GYDGNkie-----niKTFFE------SSAKEIDGVYFKLQKLKTN 91  Peptoniphilus h...
WP_012656273  31 GKVTDLTIHKITgseETTATY-------DQ-----LVNG-----------TAPAG--------SKPISNISFTYWKVTSE 79  Macrococcoides ...
WP_004820204  33 SGKTKVVVHKMHqerLEDVSEka----kQK-----GYNGGeikp---qdyTEIFG------DKSKELENVKFIVYKVTDS 94  Peptoniphilus i...
WP_047260860  49 KTDSSLTIHKR----EGVAGEt-------------RDNGLv---------NNNPG--------GKPLQGVTYQVALVKPI 94  Corynebacterium...
WP_023019142  53 GNNFSLTIHKRV---NSQTLR--------------QGTGQq---------DDQVG--------GQPLQGVDFKIQKLAGD 98  unclassified Co...
WP_012290215 100 F-VYktnsegilvdKNNQVIEANIKDYDKLTTDELKAKAVVDHEQyikgklvdgvmtpdldsndAIQFTN--DLKEAFGA 176 Finegoldia magna
Q8E0S9       102 --------------KTDISVDELKKLTTVEAADAKVGTILEEGVSl------------------PQKTNA--QGLVVDA- 146 Streptococcus a...
WP_023055265 163 ApTSg--------aPAGYTKGSELKQTAKLAENDLDNDTYYKLIQvgg--------------kdYVTTAN--GGIAEAT- 217 Peptoniphilus
WP_005396811 100 WiD-----------AEGKEVDSVDKAL---------------------------------------------GGLTTATG 123 Helcococcus kunzii
Q8DYR6        98 Sg------------KVQYVKAKEGNKLTPALINKDGTPEI------------------------TVNIDEavSGLTPEGD 141 Streptococcus a...
WP_005957478  92 Vek----------dKVDVNNDDQWEDVAGQ----------------------------------AGLTGS--QKDKTNNK 125 Peptoniphilus h...
WP_012656273  80 QlKQl---------KANPQNYDTLEKVRTLLSEPTGT---------------------------TPKTAA--DGTTKVPN 121 Macrococcoides ...
WP_004820204  95 DlLKel------adSTNKTKYDTEEKIKASDKKDKFTQEQ------------------------TQTTGR--GNAGATFT 142 Peptoniphilus i...
WP_047260860  95 T-------------NAAQFSEAAKLRYPKDKAAIDQAVANENKKV-------------------TQVTGP--TGEANFQN 140 Corynebacterium...
WP_023019142  99 IrE-----------QSDFSRLAALAKEYNQPHASADAPALDDSFTe-----------------qTRTTTA--AGEANFSN 148 unclassified Co...
WP_012290215 177 KTGdegvkfNTDKLKGTFLIQEIHEkstyvdkdgkTLTDTKAVPVEITLPLVNEKG-----TVQDAHVYPKNT 244 Finegoldia magna
Q8E0S9       147 LDS---------KSNVRYLYVEDLKns------psNITKAYAVPFVLELPVANSTGt---gFLSEINIYPKNV 201 Streptococcus agalacti...
WP_023055265 218 LPD------------GTYRIVEDKTnstykgekgeTLSGMKAVPFTLTLPVAKPDGtgnysETEPLNLYPKNT 278 Peptoniphilus
WP_005396811 124 LTLd-----TSKLPEGKYQIVEVTEkstyvgengeTLTGQKAVPVMITLPMYNSDG-----LVEVAQVYPKNT 186 Helcococcus kunzii
Q8DYR6       142 TGLv----fNTKGLKGEFKIVEVKSkstyn-nngsLLAASKAVPVNITLPLVNEDG-----VVADAHVYPKNT 204 Streptococcus agalacti...
WP_005957478 126 LEGyt---fNTKGLKGQFRIVEVHDkstykgekgeTLTDKKAVPSLVTLPLINDNG-----VVTNAHMYPKNT 190 Peptoniphilus harei
WP_012656273 122 LAE------------GYYWFIEDKSt---------AIKDAKAVPFGLELPITNEAGt---gYINDLHVFPKNT 170 Macrococcoides caseoly...
WP_004820204 143 LDK------------GSYWFIEDQTtvrd---gnkVFAGAVAVPFLLELPVYKQNGek-fsETDALHVYPKNT 199 Peptoniphilus indolicus
WP_047260860 141 LKL------------GLYLVTETNAp----------ADVHRAQPFLVMLPMTSPDNnn--aWNYNLHVYPKNQ 189 Corynebacterium mustelae
WP_023019142 149 LPA------------GAYLVTETKTpdp-----egAQTFVASKPFIAFVPMTNPQGn---gWNSDVHVYPKNS 201 unclassified Corynebac...
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