6REY


Conserved Protein Domain Family
HEAT_PSME4_mid

?
pfam16507: HEAT_PSME4_mid (This model is not part of the current CDD release)
Proteasome activator complex subunit 4, mid HEAT repeats region
The human Proteasome activator complex subunit 4 (PSME4, also known as PA200) and the yeast homologue BLM10 show 32 HEAT repeat-like modules, each comprising two helices joined by a turn, with adjacent repeats connected by a linker. Whereas a standard HEAT repeat is composed of ~50 residues, these HEAT repeats are highly variable. The length of helices ranges from 8 to 35 residues, turns range from 2 to 87 residues, and linkers range from 1 to 88 residues, with the longest linker, between HR21 and HR22, containing additional secondary structures (two strands and three helices). This entry represents the middle ordered region of the three in these proteins. BLM10 is found to surround the proteasome entry pore in the 1.2 MDa complex of proteasome and BLM10 to form a largely closed dome that is expected to restrict access of potential substrates. Thus BLM10 and PSME4 are predominantly nuclear and stimulate the degradation of model peptides, although they do not appear to stimulate the degradation of proteins, recognise ubiquitin, or utilize ATP.
Statistics
?
PSSM-Id: 522365
Aligned: 83 rows
Threshold Bit Score: 455.825
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6REY_c        330 LAGLFNSITSFYHPSNNGRWLNKLMKLLQRLPNSVVRRLHRERY---KKPswltpvPDSHKLTDQDVTDFVQCIIQPVLL 406  human
XP_003671353  493 fvNLIQSIETFVHPSNNGFWTKPIAKFVHAFIKLYHGRVKDEETavkKGR------SIEIFLSAECHFKFVDILFNILMI 566 
XP_003675755  493 LKDLVQSLDTFVHPSNQGFWTKTIAKFIHSFIKMYHGRKLEEEEaqkNGL------QSKIFLTPDCTSRIVKLFLNLILI 566 
XP_003955601  453 LVSLTKSIKTFVHPSNSGFWTKPIAKFIHSFIKIYHGRVKLEQKynfKSP---------IALNSDCNDKIVETFLDLLNI 523 
XP_003688627  462 LSSLVNSIETFVHPSNSGYWTKTIAKFIHGFIKMYHKRYTFEKYissKSS-------NDFRLTDECHAKIVDTFVDILIT 534 
XP_001643192  480 LVSLIKSIETFVHPSNSGFWTKPISKFIHGFIKMYHGRAKDEQAatrEGK------SDPMFLNEKCHSRMVEIFLDLLIT 553 
XP_001645353  497 LSALIKSIETYVHPSNNGFWTKPLAKFVHAFIKSYHERVKKEERlelKNQ------NDVLVLNSANHSKLLSLVVDILFS 570 
XP_003685137  446 LEKLSKSLVTYVHPSNNGHWTKLIAKFVQCFIKFYHKRYTDEEKvrkNGI------SNKAMLNEDTHEELVRIFTHLLNI 519 
XP_003680197  512 LTALTKSIETFVHPSNSGFWTKPISKFVHGYIKMYHSRVKNEEKtkeGPS--------DIRLTPQCHSKLVDIFLHLLVL 583 
XP_002551574  507 LQGLVKSIETFAHPSNNGPWTKVIAKFVHGFIKMYHERVKMEKNpkaNHR-------CHLKLNSACHTRVVNIFQEVIFL 579 
6REY_c        407 AMFSKTGSL--EAAQALQNLALMRPE---LVIPPVLERTYPAL--ETLTEPHQLTATLSCVIGVARSLVSGGRWFPegpt 479  human
XP_003671353  567 GAQNKSNEVanYYISCYAYLLEICPKnsfRIFDRVLVEIYDTLtgEYINSRHRVISSLKQFTRILRFMVVHPLYRI---- 642 
XP_003675755  567 GVQNKSNDVanYYIACLTYLLDLSPSnsyLIFDKILVEVYDTLagEYINSRHRVISSLKQFTRAIRFMVSQKLYRI---- 642 
XP_003955601  524 GAQNKNTDIsnYYISCFAYLLDLEPTnkyLVMDKILTDVYDALsgEYINSRHRIIASLKQFNRVVRFLVMDKLYRV---- 599 
XP_003688627  535 GSQSKGSEIanYYISSFAYLLDLNPTnkqKIFDKILGDLYEALggEYVHSRHRIISSLKQFTRIVRYMATDTLYRV---- 610 
XP_001643192  554 GSQNKSSDVanYYISSFAYLLELSPLnsnLVFDKILGDLYEALsgEYINSRHRIISSLKQFTRVVRFIVMDKLYRV---- 629 
XP_001645353  571 GSQNKNENVanYYISCFAYLLNLFPEnshIIFDRVLKDLSSALsgEYVNSRHRILSSLKQFTRIIRYMVEDRLYRV---- 646 
XP_003685137  520 GSQNKNEDVsnYYISSYTYLLDLNPPnsnLIYDHIILELYDAFsgEYINSKQRIITSIKKYSNIMRFMVMEKLYRV---- 595 
XP_003680197  584 GAQNKNTDVanHYISCFAYLLDLSPSnsnLIYDRILTDIYEALagEYVNSTHRLIAALKQFNRVIRYMVEDKLYRV---- 659 
XP_002551574  580 GAQNKNSEManYYISCLAYLLDINPGnkdLVFSKVVLDLYDSLgdLYVHSVHRLVSSLKQFTKVARFMIEDHIFRV---- 655 
6REY_c        480 HMLPLLMRALPGVDPNDFSKCMITFQFIATFSTLVPLVDCSSvl----------------------qERNDLTEVER-E- 535  human
XP_003671353  643 HITNILSLLIDKIDMNDPQLTSNVTNSIVSIATFVPFQNLVRegeyltfesttipfiqehimhlkmgQSSDNFETEDsVl 722 
XP_003675755  643 HITNILSMLIDKIDLNDAVLTSNVFNSIVTIATFVPFTNLITdgeyltfesttipfiqehfaylkmgNTSNDFPTDSkVl 722 
XP_003955601  600 HVTNILSTFVEKIDLNDINLTSNIINGIVSIASFIPLECPVQdkeylsfeshtlpfieqhfyhlksgKSSETFEYDDnVl 679 
XP_003688627  611 HVTNILSMLVSKMDINDTNLTSNLINGIVSTASFIPFANMIKddeyltfeshtlpfieqhyyyikseENNGQFQYDPeIl 690 
XP_001643192  630 HVTNILSILVSKIDMNDINLSSNIINGIVSVATFVPFTKLVSddeyltfesytlpfieqhyyhmksnVPNTTFEYDEqTl 709 
XP_001645353  647 HITNILSTLVTKIDTNDLSLVSNIFNAIVSIASFIPLENFVRndeyfsfashtlpfieqhfysikadEEDYKFEYDEeFl 726 
XP_003685137  596 HITNIFVTLISKLDYNDLQLSNCLIKGIIGTATFIPLEVPSSedghytfesytl-pfiqqhyehlkfNADKLFYYEAeFl 674 
XP_003680197  660 HVTNVLLMMVSKIDMNDIQLTSNIINGIVSIASFIPFENFAKdeeyltfeshtlpfieqhyfhfsstERFEKFAYDEqIl 739 
XP_002551574  656 HITNILFMLVSKIDYNDILLTSNIINCIVSIASFVPIDNLVSeddhlsftshaapfiekhvfflkynKELDSFEYDKsEl 735 
6REY_c        536 ---LCSATAEFEDFVLQFMDRCFGLIESstleqtreetetekmtHLESLVELGLSSTFSTILTQCSKEIFMVALQKVFNF 612  human
XP_003671353  723 dsaFRASTTIFENVIKVYVEKIFSVVDI----------------ETDDPLITKLNQTTVLMQEAMDDKVFDYYIDIFQRR 786 
XP_003675755  723 esaFRASTTLFQNIIKIYVDKLFPFVDV----------------ELDGELITKMNQTTYLIQEAMDDKMFSYYSDIFQRR 786 
XP_003955601  680 esaFRASTTIFNHILKAYIDKLFLLADI----------------ELDDGFITKVNQTTMIMIESLDDKAFNYVSDLLQRS 743 
XP_003688627  691 hnaFRASTTIFENIAREYIDKLFQFISV----------------DLEDGFISKINNTTMLMQESMDDKIFAYYSKKLLTS 754 
XP_001643192  710 dnaFRASTTIFKNILREYIDKIFQLISV----------------DLEEGFVSKLNNTSMIMQESMDNEIFTFYAKRLQEC 773 
XP_001645353  727 dlaFRSSTTIFEGILTDYVEKIFLLVNE----------------DLEDGFVTKINNTTMILIEDMDDTIFETFSQHFEKQ 790 
XP_003685137  675 dmaYKGSSTIIQNSLQQYIEKIFQFFTI----------------DIEDTLIMKMCNTTMIIIESMSDDMFEYFSKVFQKS 738 
XP_003680197  740 qnaFIASTTIFENILRIYVDKLFLLTDV----------------DLEEGFVTKVNQTTIIMQESMDEKTFNSFAELLQKR 803 
XP_002551574  736 vaaFKASTTIFEDVLKIYLNKVIQLVDS----------------DLEEGFISKVNQTTMIMMESMPDPMFKYFSGVLERT 799 
6REY_c        613 STSH----IFETRVagRMVADMCRAAVKCCPEeSLKLFVPHCCSVI-TQL--------TMNDDVlndeELDKELLWNLQL 679  human
XP_003671353  787 FWDNdyfkVKDPNY--ELTTIPLSAIVRRKNS-TSVSLVNTLIYNIkQQVergagsirSSSEIQ----QRDVKLVLYLTT 859 
XP_003675755  787 FWDNdvfkEKEPNY--ELVTMPLAAIVRRDNS-ISSTLVKTLIYNVkEQIkrgagsirSSSEIQ----QRDVKLVLYLTT 859 
XP_003955601  744 FWENdafkDKDANY--EIVTIPLAALVKRNKF-LSKKIFEALIFNIkDQVsrgagsirSSTEIQ----KRDTKLVLYLTA 816 
XP_003688627  755 FWENdlivESNPNY--ELLTIPLAALVKRDPT-LCQSIFKNLAFNIrNQIekgagsirSTSEIQ----QRDYRLVLYLTA 827 
XP_001643192  774 FWNNdsfgDSNPNF--ELVTIPLAATVRRNSS-CSKKLFSELKYNInIQIergagsirSTSEIH----PRDFKLVFYLTA 846 
XP_001645353  791 FWKIdsfgDSSPNY--ELVTIPLAAIVKRNSS-FSNNLVKQLMYNIeLQIqkgagsvrSSSKVQ----RRDFKLVLYLTA 863 
XP_003685137  739 FWSIddfgEKSPNN--ELLTIQLAALVKRDHS-LSKKLYSQLSYNIkEQIqrgagsvrSASEIQ----QRDFKLVLYLTA 811 
XP_003680197  804 LWDNdffrEKNPKF--ELITIPLSALVRRNSK-LSSPLFHKLIYHIrEQIekgagsvrGSTEIQ----QRDLRLVLYLSA 876 
XP_002551574  800 FWENdyfkEKHPNY--ELITIPLGAAARREPA-IGAKLFSTLCVNIkDQIakgagsvrSSSEIQ----HRDVKLLTYLTA 872 
6REY_c        680 LSEITRVDGRKLLLYREQLVKILQRTL-HLTCKQgYTLSCNLLHHLLRSTTLIYPTEYCSVPGGFDkppseyFP-IKDWG 757  human
XP_003671353  860 LNDVLRQSHESLLSYSAKILDFMKFLYeEVSNPPiDVLTSILTHSVLATLNTTEIIDYRLFGNNST------IPdTERWG 933 
XP_003675755  860 FNDIVRQAHEAVLLYSEDVLEFLKYLYeNVSNPPlDVITSIIPHSILSTLTTTELVDYRLFSRNSD------IPgDEKWG 933 
XP_003955601  817 LNDVLRQSHDSIFEYKKELLEFMKYIYeNITNPPlDVITSLIIHNVLLTLTSTEITEFRLFEKDCQ------LTlDSKWG 890 
XP_003688627  828 MNDVIRQSYSTVLSFHKELFDFMTYIYdNITNPPiDIITSILSHSVLATLTTTEVVNSPLFAKDCK------VSlEDRWG 901 
XP_001643192  847 LNDMLRQSHSAILEYKDDLLEFMKFIYeNITNPPlDVITSIICHSAIASLTNTEIINCSMYSDSCP------LDpKDRWG 920 
XP_001645353  864 LNDVLRESRSAILDFSDELIEFMRFLYtNITNPPlDMITSIIVHNVLASLTTTEVVEYQMFSETSD------IPqSERWG 937 
XP_003685137  812 LNDILRQSHSAILDFHEELLDFLKELYkAITNPPvAVITSILIHSILTSLTITEIIDFRQFSEFKN------ISyEEKWG 885 
XP_003680197  877 LNEVLRQAHESILEYSGKLIESMLYIYeNITNPPlDVITSIIIHSSCATLTNTEVVDYRLFPEDSN------IPpLERWG 950 
XP_002551574  873 LSDILRQAHSSMLSYREELKDILFFIFdNITNPPlDVHTSLVLHNVLTSLSSTEVIDYRLYPEKCS------MPrDERWG 946 
6REY_c        758 KPGDL-------WNLGIQWHVPSSEEVSFAFYLLDSFLQPELVKLQHCg--DGKLEMSRDDILQSLTIVHNCLIGSGNLL 828  human
XP_003671353  934 GLQFDkrk-ydkENLDFIWHTPSDQEVKLSIDLLENLTDHCITSLERQmnePRTDTSYTDKIQKYSLVLTHCLSGISLLI 1012
XP_003675755  934 GLQFDtrk-yqqENMEFDWHLPTPKEVTLAIQFFETLTDFCISHIEKImqePHLTTAVSDNIRKYVLVLTHCLSGSSLLI 1012
XP_003955601  891 GLQFDniekykpRNLNFKWHVPSKHEIELAIEILETISSYCIDKVEKLlqsPQANTYFVDSIQKFVLILTHSISGSSLLY 970 
XP_003688627  902 GMQFDdsk-fnkDNLKFDWHVSTQEEVAVAIEFLENIFKYCKENTLKTlesGETGSFFVDKIQKYVLIMTHTLSGASLLF 980 
XP_001643192  921 GLQFDnnk-fkkENLDFKWYEPTNAEVTTAIYFLEDISKHCQKRINELvdsNNTGNHFVDKIQKYVLIMTHALSGTSLLF 999 
XP_001645353  938 GLQFDkrk-fteENLNFKWYVPSNKEIETVLKIMTSILDLCETNMKEFmntSNYDTASVDRIQKYILIMTHVISGSSLLF 1016
XP_003685137  886 AYQFNnnk-flkDNLNFKWHIPSDKEVSVAIDFFDKIFDFCKSQVEIIitsDRVDSKSSDIFQKYLLVTIHAISGISILF 964 
XP_003680197  951 GLQFDdrk-fskENIRFKWHTPNSAEISLAMQILETFIEHSISQVDHLmaqPVADANYVDKMQKYILIITHALSGSSLLF 1029
XP_002551574  947 GLQFDskr-fskEMMTFKWHVPSKLEVEFGTELLENFTDYCSTNISEMmrsPHTDSAYSDKMKKYILIVTHALSGASLLF 1025
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap