Conserved Protein Domain Family
SWIRM-assoc_1

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pfam16495: SWIRM-assoc_1 (This model is not part of the current CDD release)
SWIRM-associated region 1
Much of the higher eukaryote SWI/SNF complex subunit SMARCC2 proteins is of low-complexity and or disordered. However, there are several short regions that are quite highly conserved. This is one of these regions. The function of the individual regions is not known.
Statistics
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PSSM-Id: 522358
Aligned: 53 rows
Threshold Bit Score: 44.4358
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q550R6       1066 SATLAATSIKAKALSKSEEREIQSLILKIINVQTKKLELKLKCYSEMENALEKEKNQLEKERQALFSERFSLLKaSQNNQ 1145 Dictyostelium...
XP_002492771  435 kLAIGTMAGEAYLKQKETLLQQEGLVKQVVELELKKIELKLNKLSIVEKTLDLEKKSLAKQKSDLLIDRISLRK-QVLKV 513 
XP_013022260  373 RAALNAAGEKSRIIASCERRHLRRLVFLLIQSQLEKVEIKMKVLEELEKFSSLELSEIDVRAKKLILERLSTKK-MLLEF 451 
XP_002173653  369 TVALKVAARKAGVLADYEKRQMQRLVYLLVQTQVEKVNLKMEILDQLEEISSFEFFELDRQRKQLLIEQLSTKK-MLLDV 447 
Q6FIV9        839 EIAIASLGVRSGVYANNEEKHLHALSHELVQIQLQKLDSNLELLNQMEKSFDLEKRMLEKQQESLLLQRLQIAK-NARSV 917  [Candida] gla...
XP_003678303  692 EIAFSTLGVRSKVFANNEERKLIRLSNQMVQIQLRKVETKMNLINKLEKTMELEKKVLERQQEDLLIQRLTFNK-NSKKL 770 
XP_022463592  694 EIALATLGVRSKVFATNEERQLNKLANKLVQIQSHKVNLKLATFDKLEKALELEKKLLQRKQEEFLIQRLSFAK-SAHQI 772 
XP_003683784  860 EIALASVGIRSHIFKTHEERKLNSISNQLIASQLEKVDMKLKLLDNIEKSLELEKKALQVQQEEIFLQKLSLAK-HSMSV 938 
XP_003682780  431 EIALASLGVRSHIFATNEERQLNAIANELVEVQLAKTEVKLKFLDKIEKALELDKKALQRQQEDALVKRLAFAK-HSRTV 509 
Q757Z5        469 EIAVASLGARAHVFANNEERALNAVTNELVHTQLRKVDLKLKLLDTMEKSLEVERKALQKQQEEVFLQRFSFSK-YAINV 547  Eremothecium ...
Q550R6       1146 LQQQI 1150 Dictyostelium discoideum AX4
XP_002492771  514 QSKLK 518 
XP_013022260  452 DSKlr 456 
XP_002173653  448 GKQvk 452 
Q6FIV9        918 MEIAT 922  [Candida] glabrata
XP_003678303  771 LEKFq 775 
XP_022463592  773 LEKFS 777 
XP_003683784  939 YNKFn 943 
XP_003682780  510 YEKLE 514 
Q757Z5        548 LEKFE 552  Eremothecium gossypii
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