4KXT,6N4O,6OON


Conserved Protein Domain Family
ArgoL2

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pfam16488: ArgoL2 (This model is not part of the current CDD release)
Argonaute linker 2 domain
ArgoL2 is the second linker domain in eukaryotic argonaute proteins. It starts with two alpha-helices aligned orthogonally to each other followed by a beta-strand involved in linking the two lobes, the PAZ lobe and the Piwi lobe of argonaute to each other. Linker 2 together with the N, PAZ and L1 domains form a compact global fold. Numerous residues from Piwi, L1 and L2 linkers direct the path of the phosphate backbone of nucleotides 7-9, thus allowing DNA-slicing.
Statistics
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PSSM-Id: 522352
Aligned: 318 rows
Threshold Bit Score: 42.8193
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4KXT_A         377 DRQEEISRLMKNASY--NL-DpyiQEFGIKVKDDMTEVTGRVLpAPILQY 423  human
28_pfamImport    1 ARLEAIKRWYSVLDY--NN-VpkiKAWGVEVNNLPMNVMSRVLpSPKVTY 47  
Q5KAT1         410 LRQGSIQGWRQKLNYenLPkL---KAWHLQVQTQMMSVPARVLaPPAINY 456  Cryptococcus neoformans
Q5KAU3         430 MRQSAIAAWRQKLNYsnLPkL---KAWQVEVNTNMMAVPARVLpAPSVIY 476  Cryptococcus neoformans
XP_045094156   535 QREERIKQLAAQASF--SS-DpflREFGVAVSSQMIETTARVIqPPPIMF 581 
XP_002908108   381 QRRETILGQIRQAGF--EN-DpylAAFGLEVDQQLETAEARVLdPPDVQY 427 
EFJ34377       344 QRVNATQQACLNLKK--QS-EdhaKEFGVEINPNWTRVPARVLnPPKVKY 390 
XP_009536055   323 QRKSAIERKFREAGF--ST-DptlRAFGLEVDPHMVETTGRQLpPPTIEY 369  Phytophthora sojae
XP_009525985   353 NRQENIMEQVRQAGF--EN-DpflAAFGIKVDQRLESTEAHVIdAPDVQY 399  Phytophthora sojae
XP_002908068   748 ARQETIIDQVRQAGF--EN-DpylAAFGMKVEQRLEATEARVMdPPDVQY 794  Phytophthora infestans T30-4
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