Conserved Protein Domain Family
CNOT1_TTP_bind

?
pfam16417: CNOT1_TTP_bind (This model is not part of the current CDD release)
CCR4-NOT transcription complex subunit 1 TTP binding domain
This is the TTP binding domain of CCR4-NOT transcription complex subunit 1. It adopts a MIF4G (middle portion of eIF4G) fold.
Statistics
?
PSSM-Id: 522321
Aligned: 26 rows
Threshold Bit Score: 176.644
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_015786178  834 QQQSQRGYVFNVNAIFPETQMVVN--PEIEKEADTYFQRIYNqsttGSMSIDDVLEMLRRFQDSPNKRERDIFNCMIKNL 911 
XP_002681283  375 AYQVYQTLDDSIKKEISSSEFQLS--PEVEQKTNQFFLSMFR----AEITVEAGIEKLKDLKLSKSKADQEMFACVIHNL 448 
XP_001465393  591 LKEVLKSVTDCAKALLASTDSLFP--DDVENEALEFFKKMYA-----AGSTAAAIATVENLLKSTVPRDKQLYACIVGIM 663 
XP_652682     511 SCGYDKESIETKKQCCSKTDQQ----QNISNKANEMFGDYFA----GKFSVEQFVEEIQKAKMSVEQIDNDLFVLLIKTL 582 
XP_004364719  762 QQQQQQLQQQQQQQLDSSLSDGATypPDVQAEATGELQQVFK----GSMSVERFVDRVKLLKSSAFPRDQMVLNCLIKEL 837 
A0BIL8        681 TQQFYKEVVQVFPQLAGQPNQKTN--QEVESKTDSYFESYYN----EQISLENFLNQMVQWKTQGSIQEKEVYACIITNL 754  Paramecium te...
XP_004036732  233 VFKQYKEIMEILPPL----DLQIF--SEAESRTESLLNKLYQ----EEIQCEYIIEALQQTKFSDKEEEKDFFATFITIL 302 
Q234Z9        824 LQDQYKEILQYFPQLSGTSDSPG---QATEKKANYNYQRFYM----REITIEEMIANLKQLMNSNNSEDKEVFACMITSL 896  Tetrahymena t...
XP_004030745  325 LQEQYQFIIECFPQLNGRSDPQV---QQIEKKANFYFQKLYS----KEITIDEFIENLKILNSSPSKEDNEVFACMITGL 397 
XP_003288989  757 LVNELKQLGPQLQSTEEPTERRFL--PEVEEETNSYFIKLYS----GDMTVDQIISILKEYKVSKNQKDQDIFRCLLFNL 830 
XP_015786178  912 FKEYCYFPQYPDKELLIT-AQLFGGIIQMGLVKYMALVVALRCVLEALRQPYSSKMY-FFGIAALDRFKSKLKEYPLYCQ 989 
XP_002681283  449 FDEYRFFNLYPDDVLGVM-AKLYGYIIQHNIIVAKTLKYGLICVLTALSSTE-VKMF-QFGLIALSLFKTRVSEWPQFCA 525 
XP_001465393  664 FDETSAISCYPRKELQLF-AELYGQMIAKDLLPPNQQQRAWGVLLPAVAKPGNYAME-EYGIIALEQVKPRLPDWPQYGR 741 
XP_652682     583 FDEFKRIKDFPKVETAIQfGKLYGEIILKGILKNCALIHLLRVILWAVREPLKSNFF-YCGIHALKQFSSRLSEWPTYCV 661 
XP_004364719  838 YSEYLHLPRYGDETLTIA-GRLYGSLLSERVVSGVVGASFLKFILEGLRKPSDSRLFvRFAIVGLDCIKSRLAEWPQFAL 916 
A0BIL8        755 YNEYQFHLKYPKKELELT-GQLFGGVLERGLVEGQSIQIGLRIIQVSLKNN--TQRY-DFAVKALEVMKNKIYEWPWFAQ 830  Paramecium te...
XP_004036732  303 IEESKFYENYPEKQLVIA-GKLYGSIIREDLVQGQPLGIMLKIIIECSKK---IKKL-DFSISAIEQMKEKIFNYPQFIQ 377 
Q234Z9        897 IEEAKYHQQYPIAELLLT-GQLQGSIINAQLVNQKPLGIMLEQILESSKKT--QRQV-EQSVKAIEAMKDRLHEFPYFVN 972  Tetrahymena t...
XP_004030745  398 LEECKFHDQYPFNELLFT-GQLFGAIINADLINNKPLSIVLDIIVEYCKKN--NKKN-EFSVKAVEGMKDKLFDYPKFIV 473 
XP_003288989  831 FDEYKFLSDYPDKELKIT-GVLFGSLIKNLLISSQPLRVALKYVLEALRFPIKSNMF-VFGFNALISFPNRLAEWPQYWA 908 
XP_015786178  990 HL-TSIPHFN-EFPRPLQEYIQYGASSEDPPSA 1020
XP_002681283  526 HLrTKVPQVF-THIPDLAQHAAKGFSMVDSMLP 557 
XP_001465393  742 AL-RYVRDLD-FRVPGIVAAINRGIKQEDAAAR 772 
XP_652682     662 LL-KDNKNIE-THDAVLYKTIYDNANNKFSNII 692 
XP_004364719  917 KI-VEIPHFL-RFPPELVQAVRNSLQQGASASD 947 
A0BIL8        831 DV-MACEQLSfKNPDLLAEIIRVCEKHGIKSPL 862  Paramecium tetraurelia
XP_004036732  378 KIiDIKSQIIeKNPMFVFNLYHQQQQQQIQQQQ 410 
Q234Z9        973 ALfDPSCHLSeQFPQLLINIYNIMIEKKVQINv 1005 Tetrahymena thermophila SB210
XP_004030745  474 QLfD--SLLVqKNPDLLMKIIEVNQKKKKKKKK 504 
XP_003288989  909 QI-CSIDHFR-ENYGDMISAINRMIDSSETTKQ 939 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap