Conserved Protein Domain Family
DUF4953

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pfam16313: DUF4953 (This model is not part of the current CDD release)
Met-zincin
This is a family of uncharacterised proteins that carry the highly characteristic met-zincin motif HExxHxxGxxH, the extended zinc-binding domain of metallopeptidases.
Statistics
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PSSM-Id: 522281
Aligned: 133 rows
Threshold Bit Score: 193.253
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8YSH0          587 NQEQLQQYINQYLRLIIAHEVGHTLGLRHNFRGSNLLSPEEMNNPEISRTKGLTSSVMDYIPPNIAPQ-GTQQGDY---F 662  Nostoc sp. ...
jgi:Odosp_2955  431 EEIIPDTLLARIAKFVVTHEVGHSLGLCHNFIGSSAYTVEQLRTPDFVAKYGTTPSIMDYTRFNYIAQ-PEDKMDSkllS 509 
WP_013611004    414 RIVLPDTLLGKLIQYVVCHEVGHALGLKHNFRGSSVFSTASLRDKEFLRNNGHGASIMDYMRFNYAVQ-PEDDVSLddlI 492  Odoribacter...
WP_008509796    394 KSMNNPQLKGEILRWKAMQALGELLGLKPNLYASNAYTTTQIRSAGFLKKNSFTSSVTDDSQFNYAVQ-PDDQVPLsglI 472  Mucilaginib...
XP_002999270    496 qgfVPKRLVAQHFADIVMHEVGHTLGLRHNFAGSSAYLRDQLRDPAFVAEHGLSTSIMDYLPVNIFSDlTKDEAKNhgfF 575 
2_pfamImport      1 ---VPKRLIAQHFADIVMHEVGHTLGLRHNFAGSAAYSREQLRDPAFVAEHGISTSIMDYLPANIFSDlTKDEAEKhgfF 77  
WP_011761235    395 AAKAAEHLALERIRQLSAHEIGHTLGLDHNFAASSN-NN---------------ASVMDYPHPMVT-L-SNGKIDIsqpY 456  Shewanella ...
Q07XD5          401 AANAAMELSLARIRQLAAHEVGHTLGLDHNFAASTN-DN---------------ASVMDYPHPYVS-I-QGDNIDIatpY 462  Shewanella ...
WP_013049640    397 AEDASMALSLARIRQLAAHEVGHTLGFDHNFAASSN-DN---------------ASVMDYPHPLAT-L-KGDKIDIsapY 458  Shewanella ...
Q5QX38          402 LKSAVKNMALARIRQLSAHEIGHTLGIAHNFAASAS-DR---------------ASVMDYPHPLVNLT-TDGGLSLsnaY 464  Idiomarina ...
Q8YSH0          663 pSMVGSYDEWAIQYGYTQTNA-TTPIAERPI---LQEI-ASQSY-KPELSYSPDedm---ydLDPTADAWDHSSNVLVYS 733  Nostoc sp. ...
jgi:Odosp_2955  510 -PNVGIYDCFAIEWGYRYY---RHHANSDSL---LKEW-VTQQQeQRELRFANNs------gIDPEVQSEDLSNDLLAAN 575 
WP_013611004    493 -PRVGEYDCFAIEWGYRYFPS------EEVArkrLWEWv-DSMAqNPLYQYGGVd------kTDVFCQSEDLGFNQMEVN 558  Odoribacter...
WP_008509796    473 -PGISAYDRMAINWAYRIFPD-------QKA---LKAFeSNISYdDAALRYVEAn------kDDPFTQPGNLASNQLDAV 535  Mucilaginib...
XP_002999270    576 mTTIGAYDYAAIAYGYSIISD-ETPGYKHPR---LSELaA------NAPLFLTDetv--dymLNPYAQRFDLSSDPVDYA 643 
2_pfamImport     78 mATIGAYDYAAIAYGYSIVND-EIPGYKHPQ---LTELaA------AAPLFLTDesv--dsmLNPYAQLFDLSSDLVDYA 145 
WP_011761235    457 vPGVGAWDKFAIAYGYGDFGDn-----EAEG---LSTL-LAEVQ-TKGLRYIGEsdsrspdaSHAYASLWDNGADPVAEL 526  Shewanella ...
Q07XD5          463 tEGMGEWDKYTIAYGYGGLTQt-------------ESL-LTSTL-TKGFRYIGEadsrsasaSNAYASLWDRGNDAVAEL 527  Shewanella ...
WP_013049640    459 gVGVGAWDKYIVEYGYREYADsGE---ESAQ---LSEL-MAQVQ-RQGLRYIGEadsrskgaSNAYASLWDNGSDPVAEL 530  Shewanella ...
Q5QX38          465 tEGLGVWDKQVLAYGYSDFGGmPS---SDEQ---LARI-LDENK-TLNLSFISDrdarpaggAHPQAHLWDNGSEPVTEL 536  Idiomarina ...
Q8YSH0          734 QWQLDNSRLMWESLNKR-F--PmPGESY-SDLSDRFGSVLSNYFQNIFYTTKYIGGQSFYRLKAGEIsanklasrpNRl- 808  Nostoc sp. ...
jgi:Odosp_2955  576 ALGIENLKYMKSNEPLWrSg-EwANRQI-WINRQSWMEI--QYNNFLTQAILYIGGINTL-------------------- 631 
WP_013611004    559 ELGIKNMQRLLQM-PIWmKe---QDEVAkKVMSSRYRGMLIRYQGYINQVLRNLWGVTERRDSLGQK------------- 621  Odoribacter...
WP_008509796    536 ELGMKNIQALYPRLDKItGdmVgHDEDY-ADFVAIANAFQSAYNDYTKSLFMLIGGQSNRPVIRGYN---------EV-- 603  Mucilaginib...
XP_002999270    644 ADRLKFVQNARSSNAALnK--IpDDASW-TTLWQREIVYLRLLEQAIDIVRPVLGGVNITHAHRGKD---------GGay 711 
2_pfamImport    146 ADRLTFVQNSRSTDAVLsK--VpEDASW-TTLWQRERAQLRMLEQAIKIVRPILGGVNVTHAHRGKD---------EGly 213 
WP_011761235    527 ARLQQVRQKALADFNPE-A--LlPGEPQ-GELADSLVPIYLLSRYQIEAAAKLIGGTDYGY----D----------GVy- 587  Shewanella ...
Q07XD5          528 VRLETVRRKAIEDFNSD-A--LlADEPH-GELADVFVPIYLLTRYQIEAAAKWIGGTDYSYQQVGS----------Gv-- 591  Shewanella ...
WP_013049640    531 IRIDKVRAKAINDFSPS-A--LlAGQPR-GELSDIFVPIYLLNRYQITAAAKFIGGTDYSYSEDVD----------Gk-- 594  Shewanella ...
Q5QX38          537 ERLLSVRQQVLDNFSKD-M--LnSDQPL-SQLQSIFVPIYLLHRYQTEAAVKWLGGVNYHYYMADD----------STd- 601  Idiomarina ...
Q8YSH0          809 PFEPVPVEQQRQALKTLQKYIFAeda-lnFPPDLL-----NKLapsrwyhwgSFPqig-----rlDYPVHDLILFLQa-A 876  Nostoc sp. ...
jgi:Odosp_2955  632 TQQPIPIRKQLDAIEFINKYAFS------SPEWLF--------------------------------GNHRRTSSFYq-E 672 
WP_013611004    622 -WEFVGMERQQVAYDFLEQYAFT------PQHWLFrqdmfSYYgidermnweSICw-----------------------S 671  Odoribacter...
WP_008509796    604 PVVYVSKNEQQKAFDLMNTYLFSg-----VPDWMNn---pRLRk--------------------sNSPPVENKFQRQveI 655  Mucilaginib...
XP_002999270    712 NATFVSKETQLQALKVLLRIVEAekglfpEPKDYN-----SFVevvgyddedCNE------------------------- 761 
2_pfamImport    214 HAPFVPKNRQLAALQVLQRIIRAesglfpLPKDYA-----SYMevvgfknedCSE------------------------- 263 
WP_011761235    588 SWHYVAPELQKQALGTLLV-TLDtae-ltLSRELV-----ESLlpkq--gnySAGresfasglgiVADPLGMAEVLSr-H 657  Shewanella ...
Q07XD5          592 RWNYIRPKMQLAALDALLA-SLQtes-llVPNNVL-----QALvpka--gnyRKTresfgsnlgvITDPVAMAEVLSr-H 661  Shewanella ...
WP_013049640    595 SWHYIAPQLQKSALDALLD-TLSpka-lvISQALQ-----ESLvpka--anySKTresfdsglgvIIDPLGMAEVLSr-H 664  Shewanella ...
Q5QX38          602 DYQPVGAARQQAALKQLLK-TIQadt-lrVPSHIK-----QWLvpsa--ygeSSSrenfsgktglIPDTVSMAASAAd-H 671  Idiomarina ...
Q8YSH0          877 VLRELLAGDRLTR-LKDIELKsLP-----EKSLPLPELFDTLQTGVWTEVlkPK 924  Nostoc sp. PCC 7120
jgi:Odosp_2955  673 IIRSLIQRCEYVQ---------NSserypNNTISIKEYITVLHQTIFDRHqtdr 717 
WP_013611004    672 VVSGLLDKLDSPL----------------FEKYSLGDYLKQVRSSLFREWe-LN 708  Odoribacter splanchnicus
WP_008509796    656 ALSRLVSPVVIGN-LIKAENA-NG-----NTEFTVQDLFNNLDHYIFKDFd-AT 701  Mucilaginibacter paludis
XP_002999270    762 ---STLDYACLGRgLVDVGAYvLR----------YSKMFRVLWHWMSC------ 796 
2_pfamImport    264 ---PTLDYGCLGRgLVDVGTYvLHvrgaaVKAALFPAMERIVQQEALSPLtlNE 314 
WP_011761235    658 TLKALLAPKRLNR-VEQGFQS-DS------EQLSVNELLDKLMAVTLYQEgkTG 703  Shewanella amazonensis
Q07XD5          662 IVTQLLTPERLNR-VSQAYME-DS------QQLSVVQLIDKLAGASLYQDlpSG 707  Shewanella frigidimarina NCIMB 400
WP_013049640    665 TAQQLLAPQRLNR-VNQGYIG-DR------EQLSVPALVDKLLGSTLYEDmpNG 710  Shewanella violacea
Q5QX38          672 SLSLMLNSQRLNR-LAQQHAD-ND------RVPSPAGLMTAIFNTVFSDWenAK 717  Idiomarina loihiensis
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