Conserved Protein Domain Family
Oberon_cc
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pfam16312: Oberon_cc 
Coiled-coil region of Oberon
Oberon_cc is the coiled-coil region of Oberon proteins from plants. Oberon is necessary for maintenance and/or establishment of both the shoot and root apical meristems in Arabidopsis. Most Oberon proteins carry a PHD finger domain, pfam07227 and this coiled-coil domain. Oberon proteins mediate the TMO7 (the direct target of MP) expression through modification of, or binding to, chromatin at the TMO7 locus. TMO7 stands for the target of Monopteros 7 (or Auxin response factor 7).
Links
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Statistics
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PSSM-Id: 495744
Aligned: 21 rows
Threshold Bit Score: 138.596
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
XP_002451176  460 KCAHLAVEACERELE----EKAREAQELKVERLRKLQQAEELESIIRLKQAEAEMFQLKASEAQEEAERLRSIALAkkKS 535 
XP_006365845  413 KKARLSVEACDQELK----DKAREVTMLKMERQKKKQQIDDIESIVRLKQAEAEMFDKKAAEARREAERLQQITLA--KT 486 
2_pfamImport    1 KKARLALEACDRELE----DKAREVNELKLERQRKKQQIDELESIVRLKQAEADMFQLKANEARREAERLQRIALA--KS 74  
EFJ32274      331 ERATLALQTYDRVLE----EKRTDAAEMQYERARKKAEIEELESIVRIKQAEAKMFQARADEASREAEGLQRIVLA--KC 404 
NP_001147112  595 KPSTSILDSQINVLKa---SPKPLSIEPHFSSSSKEDDSSSLETIVKCKEAEAKLFQKLANDARKEVDSYRQIVRA--KT 669 
XP_002281609  677 qrdLLLHDLRQNDLKasliGDLKTNDEFRFGKSSNKDMFDSLESIVRIKEAEARMFQNRADEAQREAEGYRRMVHA--KT 754 
XP_003531140  651 hpdamscdlLQKDLKasilSELKNEADFHLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQRMIRT--KT 728 
XP_015579893  669 kRDSLSNDLHRNDLKaaflSDLKIEDEFQFGKLSKKDGLDSLESIVRIKEAEARMFQSKADDARREAEGYRRMIRA--KS 746 
XP_002878520 1029 KRSASVVDAFHRERQv---EICGVEMELKRES-PKEPRFEELESIVRMKQAEAEMFQGRADDARREAEGLKRIAIA--KK 1102
XP_003540588 1045 erpANILPTFDQN------DKRTLVQELQMSSIQKDFCFDELESIVKIKQAEAKMFQSRADDARREAEGLKRIALA--KN 1116

XP_002451176  536 EEAGQDLASLYLKRRLEEAEAEKQFIFEKIKLQENNQRAppqvasssgggggvgmrggssgGEPSQVMMLSKIQDLL 612 
XP_006365845  487 NKSEEDYTNRYLKQRLCEAEAEKQYLIEKMKLQESSRasqs----------------saggSDPSQI-MYSKIQD-L 545 
2_pfamImport   75 EKSEEEYASRYLKLRLSEAEAEKQYLFEKIKLQESSRssqs-----------------ngaGDSSQMLMLSKIQDLL 134 
EFJ32274      405 VKVEQEYVGKKSKLQLLEAEEKRKRKFEDLQFLEKGSSN-----------------------FDIVRKLMGDLQDLL 458 
NP_001147112  670 HKLEEEYAAKVAKLCFQETEEKRRKKVEELKVLENSHYD----------------------YHKMKLRMQTEIQGLL 724 
XP_002281609  755 EKLEEEYTEKLAKLCLQETEERRRKKLEELKVLENSHCD----------------------YYNMKMRMQAEIAGLL 809 
XP_003531140  729 AQMEEEYAEKLSKLCLHETEETQRKKLDELKVLENSYFD----------------------YYKMKKRMQDEIDGLL 783 
XP_015579893  747 EKLEEEYAEKLAKLCLQETEERRRKKLEELKVLEHSHGD----------------------YYNMKLRMQAEIAGLL 801 
XP_002878520 1103 GKIEEEYKRRMGKLSMEEAEERRRRRYEELEAMERGQRE----------------------FYEMKMRMEEEMRGLL 1157
XP_003540588 1117 EKIEEEYTNRIAKLRLTETDEIRKQKFEEAQALERAHLE----------------------YLNMKMRMETDIKDLL 1171
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