Conserved Protein Domain Family
NPM1-C

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pfam16276: NPM1-C (This model is not part of the current CDD release)
Nucleophosmin C-terminal domain
This domain, approximately 50 residues in length, is mainly found in Nucleophosmin proteins in mammalia species. Nucleophosmin, a nucleocytoplasmic shuttling protein, is related with cancer and involved in serveral cellluar functions, such as ribosome maturatation and export, centrosome duplication, and response to stress stimuli. This domain has a three-helix bundle which can bind G-quadruplex DNA and the interaction involves helices H1 and H2 of the NPM1-C domain mainly through electrostatic contacts with G-quadruplex phosphates, indicating a crucial role in rescuring its function in leukemia.
Statistics
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PSSM-Id: 522272
Aligned: 12 rows
Threshold Bit Score: 63.224
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_069052171 254 AEIKAKMMVGVEKGVMLPKVEAKFENFVKNGFKVDDKNtiqELWKWRQT 302
8_pfamImport   1 PEIKSKLSTAAKEGKPLPKTEPKFENYLRSAFKISDKQ---VSNLCTVL 46 
1_pfamImport   1 PEIKAKILASVEKGVSLPKLQPKFENLVKNGYKVSDPKvveELWKWRQT 49 
5_pfamImport   1 DDVKAKMQTSIEKDGSLPKVDANFINTVKNCFQRTDQEaiqNFWQEWNS 49 
3_pfamImport   1 KDIKRKAQASIEKGGSLPKVEAKLIHYMKNCFQMTDQDq--DLWQWKKS 47 
4_pfamImport   1 EDIRQKCKSEYRKRWVSSHSGAKFIQCVKSCF-MTNQEavqGLWQCRKS 48 
XP_023197442 250 PQLKIKLMEAMKKGVMLPKVQPKFENFVKNSNKVCDPQiiaDLWKWRQS 298
XP_004076618 239 PEIKAKIMESVKKGVALPKVQAKFENFMKHGQNVTDAKvisELWKWRQT 287
9_pfamImport   1 PEIKAKMMEAVKKGVTLPKAQPKFENFVKHGHKVTDPKviaELWKWRQA 49 
NP_990598    245 EEIKAKMQASVDKGCSLPKLEPKFANYVKNCFRTEDQKviqALWQWRQT 293 chicken
XP_064422813 261 EEIKVKMQQSVEKGVFLPKVEAKFFNFVKNGFRQDNPKviqELWKWRQS 309 coelacanth
XP_029703086 254 PEIKNKLSTAAKEGKPLPKTEQKFENFVKSSFKITDKKvvkDLWAFVQS 302 torafugu
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