Conserved Protein Domain Family
SF1-HH

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pfam16275: SF1-HH (This model is not part of the current CDD release)
Splicing factor 1 helix-hairpin domain
This domain, approximately 100 residues in length, is mainly found in splicing factor 1 from yeast to human. It is a helix-hairpin domain, which forms a secondary, hydrophobic interface with U2AF65(UHM) to lock the orientation of the two subunits, which is essential for cooperative formation of the ternary SF1-U2AF65-RNA complex. In this domain, it contains a highly conserved SPSP motif in its C terminal and phophorylation of SPSP motif induces a disorder-to-order transition within a novel SF1/U2AF65 interface, indicating a phosphorylation-dependent control of pre-mRNA splicing factors.
Statistics
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PSSM-Id: 522271
Aligned: 77 rows
Threshold Bit Score: 100.763
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002545670  25 RETKWSGKPRRYVQLgEQTFDTMITGHLTEEQLTAYQEYFRSEEITHLLNIARqqhrpvPeILPSakfessdpqlkyKRD 104
XP_003284739  47 RLSRWDSTPSMDS-SpFSSIFKTLPPGLTDEQISALILRLRIDEITKKVTIGP------IeITDRd----------rDRS 109
Q54BM5        60 RLSRWDTPLTNDGVSpFSSIFKTLPPGLTDEQIAALILRLRVDEITKKITIGP------IeFTERd----------rERS 123 Dictyostelium d...
XP_004359662  50 RKNKWDVDKNPAVSLp--GIPKTIPPGLTDDQLSSLLIRVRIDEITKKLVTGP------IeYDTKe-----------DRS 110
XP_020435246  49 RKNKWEPEKTQLGLPg---VPKSLPPGLTDDQLASLIIRIRIDEITKKLTTGP------IdIDTKd-----------DRS 108
XP_001315055  12 RKSKWGPEDEKTVMSn---VANILPPNLPPDVLNAFLLRFQLEEVQYKMNHLQeerkniLyge------------tlINN 76 
Q7RGZ6        42 vpSRWGDENYKPYLPl---PFVDYPPGLTPSQLDQFLREQRYDELTKKLNKGEleyv-----------------dpdIRP 101 Plasmodium yoel...
A0E4D7       130 SHTRWGPDYEKTFQPp---SLNCIPPDLSIDDLEYIIRLYCLDDINQKLQQPIdskm----------------ddpdLRS 190 Paramecium tetr...
XP_001023320 159 KFSRWGPEYEKTFHPp---PLNYIPQNINDDDLEYIIRLYRLDEIQNKMINKIqtle----------------ddsdCRS 219
XP_004037355 129 aPSRWGAEYEKTFHPp---LLNYIPLQISDDDFEYLIRLYRLDEINNKQLYKTknil----------------ddedCRS 189
XP_002545670 105 PSPPPKYDRDGMKINTRDRVVREALEKERHEMVELAAGSIKGYMPPSNYT 154
XP_003284739 110 PSPPPIYDSNGKRSNTREQRIKDKLQKERHHLIVTAQRISPTYKPPSDYQ 159
Q54BM5       124 PSPPPTYDNNGKRSNTREQRIKEKLQKERHQLVVTAQQINPTYKPPSDYQ 173 Dictyostelium discoideum
XP_004359662 111 RSPSPVYDNTGKRTNTREQRTRDKLAKERHNLVTNAQQINPNFKPPSDYQ 160
XP_020435246 109 RSPTPVYDNTGKRTNTREQRAKDKISKERHNLITQAQQINPQFRPPADYQ 158
XP_001315055  77 MNP----DQRG--FIHPDVRARDALVKERSQILNAIEKIFPVFRPPLslk 120
Q7RGZ6       102 PSPPPIYDKNGNRINTREARIKNSMIEEHHRLIEYLLKHVEGFVAPSNYK 151 Plasmodium yoelii yoelii
A0E4D7       191 PSPEPVYDQHGKRVNTREVRRKENFQRIKCSLTEECIKINKNFVPPHDFK 240 Paramecium tetraurelia
XP_001023320 220 PSPDPIYNEQGKRINTRDYREQESLQKEKYNLIEEAMRINPAFIPPHDFK 269
XP_004037355 190 PSPEPIYNESGKRINTRDIVEYETIQKEKHNLIEECMKINPTFVPPHDYK 239
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