2LR4


Conserved Protein Domain Family
DUF4879

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pfam16219: DUF4879 (This model is not part of the current CDD release)
Domain of unknown function (DUF4879)
family of short proteins of bacterial proteins of phage origin, exemplified by protein SPBc2p013 from Bacillus phage SPBc2, found in various Bacillus and Pseudomonas species. Structure show unexpected structural similarity to greek key beta barrels from the E-set domain, especially to domains involved in carbohydrate and protein- protein binding. However functional consequences of this similarity are not confirmed.
Statistics
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PSSM-Id: 522260
Aligned: 7 rows
Threshold Bit Score: 148.428
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LR4_A          3 EALPLYYLQITGITSDGNDF------AWDNLTS-SQTKAPNVLKGNKLYVKARFMGYtkltvitGkDGKNLLYNG---TA 72  Bacillus subtilis
WP_013700518    3 QAMPLQEVRVIGVCSEKSKG------EWEEIKK-GQSMTRHSHGGSFLRIATVDIGY-------GhSGVEKMNSS---QL 65  Treponema succ...
WP_366927044   12 PAPALSSVQVYAVYSSLKGG-------WQAVPT--NTLSLSGYAGGTLRIAVLEVGY-------GgNRIGWLNGG---QT 72  Dickeya dadantii
WP_013317895   70 PAPALSRVTVYAVGSS-NCG-------WEYMTSiGQLSTTCDHGGAQLRVAVQEIGY-------GnNPVAWMNGGvlpRS 134 Dickeya dadantii
Q7MYD3         69 PAPPLTNMWVYAVGST-NCG-------WEYTSN--LPVTNCNHGGQQLRAAVLEVGY-------GyNSFAWMNGGalpYS 131 Photorhabdus l...
O31994         30 EALPLYYLQITGITSD---Gnd---fAWDNLTS-SQTKAPNVLKGNKLYVKARFMGYtkltvitGkDGKNLLYNG---TA 99  Bacillus subti...
jgi:Hoch_1105  79 PAPGITYFQIVGICSSYSGGcnpatyTWESIDA-YQTSTVFNHGGSIVGTAVLEYGY-------G-NGGANLGGV---SG 146
2LR4_A         73 KMFKSDai----------lgQNKVVIGWDKYFEipMDALQDNSIQIKALSSGTTFVYSQKID 124 Bacillus subtilis
WP_013700518   66 KQYDSSie----------tdSSGIAFAFIKYWN--ADGYNGGNFTYENDTLTGTYCTKSTRL 115 Treponema succinifaciens
WP_366927044   73 SPYQVNpvcvvsgrytescpAGSIVSGWMAYFN--ADNMSSVTFRYQSTSTNFPNRTLSTSL 132 Dickeya dadantii
WP_013317895  135 ANYQTDgicivgnqytfpcpAGYTVVGWMYYYN--LDGTDNGQFKFQDTSTNAPRNTLFTQT 194 Dickeya dadantii
Q7MYD3        132 L-YSSTpvcitngyynwpcaAGQIVVGFLKEYS--LDGYQNGIFSYQNTSANWPRNTMSTQI 190 Photorhabdus laumondii subsp. la...
O31994        100 KMFKSDai----------lgQNKVVIGWDKYFEipMDALQDNSIQIKALSSGTTFVYSQKID 151 Bacillus subtilis subsp. subtili...
jgi:Hoch_1105 147 SNYDIEylcgsms-nlhscsTGETVTGFLKFYS--FSGPQGGSLSANTSSIAYPFGFWSDSL 205
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