Conserved Protein Domain Family
BLM_N

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pfam16202: BLM_N (This model is not part of the current CDD release)
N-terminal region of Bloom syndrome protein
BLM_N is the very N-terminal region of chordate Bloom syndrome proteins. The exact function is not known.
Statistics
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PSSM-Id: 522244
Aligned: 18 rows
Threshold Bit Score: 365.235
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ELK18290        1 MAAVPQNNLQEQLERHSARKLNNKLSFSKPKSSGFTFKKKISAANDVSVTSVSVAK-TPVLSDKDINVTEAFFFSEPL-A 78  
XP_007479356    1 MAVIPQNNLQQQLERHSAKEIQNKLNVLRPKSTGFTFKKKIPPGN-------SVTH-APVLGDKDVNVTETFPLSKAF-F 71  
XP_023352609    1 MAIIPQNNLQQQLERHSAKEIQNKLNVLKHKSTGFTFKKKIPSSS-------SVTQ-AFVLSDKDVNITENVPLSKPL-P 71  
8_pfamImport    1 MAGLPHNNLQEQLERHSARKLNNKLSFSKPKSLGFTFKKKTPSDNSISLTSMS------------DNVTEAFSVSEPP-S 67  
XP_008273539    1 MAAVPQNNLQEQLELHSARKLHNRLNLSKPKSSGFTFKKKASSGNSASVTSVSAAR-TPVLSDKDVNVTEGSSFSEPQ-A 78  
EHB03240        1 MAAIPLNNLQEQLERHSARKLNNKSDLSKPKPCGFTFKKKTTSDNDASVTSVSIAK-TPVLSDKDVNVSEVFSFTEPP-P 78  
EGW13408        1 MAAVPLNNLQEQLQRHSARKLNNKFDLSKPKSSGFTFKKKTSEG-DVSVTSVPVVK-TPALSDKDVIVSEAFPSTESPlL 78  
O88700          1 MAAVPLNNLQEQLQRHSARKLNNQPSLSKPKSLGFTFKKKTSEG-DVSVTSVSVVK-TPALSDKDVNVSEAFSFTESP-L 77   house mouse
XP_063118705   10 MAAVPLNNLQEQLQRHSARKLKNQFSISKPKPSGFTFKKKTPEGD------VSVVR-TPVLSDKDVNMSEALSYTEPP-L 81   Norway rat
XP_028907286    1 MAALPQNNLQQQLERYSAKETHNKLSLQKPKSTGFTFKKNLSPGSSVSAACLKVPNtTAALRDKDVNSTTASSLGG---- 76   platypus
ELK18290       79 HTTSQQTEIDDF-QNAPARQQTKRAGSKPLLPDLVQ---EVLHTTQS----TPIIKESRDPAFKKLEFSSSSDSFIAINN 150 
XP_007479356   72 NAKNQQTSISDSsEKTSKAQQIQKFCSNQILLNSSKntqETSKVSQPpt-kENCVKKELCKDSKILETNSSFDSIL-VND 149 
XP_023352609   72 NTKNQQASITASsEKTSKGQQIHKFCSNQILSDSSKnthETSCYLQPst-nENSVKKVLCKDSKKLELNSSFDSTSLVSD 150 
8_pfamImport   68 HTTNQQTKINDFyKNAPAGQQTQRVGSKPLLPDLVQipkEVLCTTPH----TSVIKKPSDAAFKKLDFSSSSDSFGAIDN 143 
XP_008273539   79 CPAGPPARINDFfKNAPAGLQSRGAGSTPLLPDVSQtpqEASCTPRL----APAAKTPRDTVFKKLDFSSSLDSLGALNG 154 
EHB03240       79 HTPSQQPRINGFfKNAAVGQQGQRTGSKLLLTGLLQipqEALPTTQN----ISAVKKPHNAILKKLEFSSSSDSFHTMND 154 
EGW13408       79 HTPKQQPGIDGFfKNSLGEQQTK--GTKPSQLDLVQipqEVLCTAPK----TPAVKKPHISVFKKLEFSSSPDS---LND 149 
O88700         78 HKPKQQAKIEGFfKHFPGRQQSKGTCSEPSLPATVQtaqDTLCTTPK----TPTAKKLPVAVFKKLEFSSSADS---LSD 150  house mouse
XP_063118705   82 HKPKQQSNIDGFfKNSPGGQQSKETCSELSLPEVVQipqDASCTTPK----TPAVKKPHVAIFKKLEFSSSADS---LSD 154  Norway rat
XP_028907286   77 ---NQQRRIGGFfEKSLKNEETQPLGTDRAGSSSRKtqtAVSRGSQPpakgMTITPDPPDIVSKRLDFSSALDTILSLDD 153  platypus
ELK18290      151 WDDMDDFDTSGN--SKAFVTPLRNHF-VRVSTAQKSKKSKRNFFKAHLHKANTVKVDl---tSSSSESNQVYSTKEQkAD 224 
XP_007479356  150 WDDIDDFDTSGN--SKTFTTPSRTHF-TKLNNTQRSKTDKNNLSKTQ---TSGKKIDpellnFPSGKSRQVELTRKElPE 223 
XP_023352609  151 WDDIDDFDTSGN--SKTFTTPSRSNF-AKLNSTQRSKGDKNNLSKTRARKANGKKVDpellnFPSGKNKQAELIKKElPE 227 
8_pfamImport  144 WDDMDDFDTSGT--SKAFVTPLKNHFlLRVSTAQKSKKAKRNFSKEQLYKTDTVKAGl---tTSSSENKQVDFTKGQkDD 218 
XP_008273539  155 WDDMDDFDTSGT--PKAFAASPRKPV-ARVSTAQKSKRAKRNFCKAQLKKADAAEADl---tPASAASKPVELAGAGkGD 228 
EHB03240      155 WDDMDDFDTSET--SKVFATPPKNHL-VRVSTAQKSKKAKRNFFKAQPHKTNTVKADl---tP--SESQPVDLTKEEkDD 226 
EGW13408      150 WADMDDFDISA---SDAFVSMSRNPV-IRVSTAQKPKKSIRNFFKPPPHKASVVKAGl---tLSSPESSQVDLTKDQkDE 222 
O88700        151 WADMDDFDMSA---SDAFASLAKNPA-TRVSTAQKMKKTKRNFFKPPPRKANAVKTDl---tPPSPECLQVDLTKESeEE 223  house mouse
XP_063118705  155 WADIDDFDVPA---SDAFVSLTRNPT-TRVSTAKKLSSSKRNFFKPPP-RASAVKADl---tPSSPECLQVDLTKEQeEE 226  Norway rat
XP_028907286  154 WDDLDDFDTSGKncPKAFVTPPSSQA-VKAGRTPVSSR-KDDASNARVSKAKTGKVGvelvePRPGGGDRVARTSDPlRE 231  platypus
ELK18290      225 ---------SKWLNSGVICIDDSPNSqel-ineDSQDSHSlkthLREEGD-NSEKKKNFE--ETELYSIEKSP---CI-- 286 
XP_007479356  224 ---------SEELNSPVICLDDY-VSeev-rneDIQESHAskthLCKERD-DNEKKKYPN--GTEQHAADESLgadFA-- 287 
XP_023352609  228 ---------SEELSSPMICLDDDPISeef-kneDIQEKQAlktqLDDERD-YSEKKKSPE--RVEQHTIDESLganCE-- 292 
8_pfamImport  219 ---------SERLSSDVICIDDDCISevr-ineDTQESHSlkthLGDERD-NSGKKKNLE--DTELHSTEKIP---YT-- 280 
XP_008273539  229 ---------CDGVGGGVICIDDDDGPvsqvlilDSQESHSlethLGGERD-HPEDKKVLD--TVELHSAEEVP---CI-- 291 
EHB03240      227 ---------SEWLKSGVICIDDDSIPqvh-tdeDTQERHSlkihLGDERD-NNE-KHNEE--DVELLSSEKAT---CV-- 287 
EGW13408      223 ---------SEYLSGDVICIDSDPGSeel-vkkDAQESQSleteLEVERD-NSEKKNHVG--EVKLQSTEKAL---Y--- 283 
O88700        224 eeeeeeaegADCLSRDVICIDNDSASeel-tekDTQESQSlkahLGAERG-DSEKKSHED--EAVFHSVQNTE---YF-- 294  house mouse
XP_063118705  227 ---------ADCLSRDVICIDTDPASeel-lekDVQEGLSldarLGTERGiDSAKKSHED--KAAFQSPQNAL---YF-- 289  Norway rat
XP_028907286  232 ---------PE-PSGDSVIYAETADSrgi-paeDVQEVRSfeaiSHDERE-----KNHTDdrEKEQNSEEIEF---PEge 292  platypus
ELK18290      287 --------------------ELDEDDYDIDFVPPSPEEEMTSASs--sSLKCFSMLKDLDTCDqKKESFGTSED-LTKPE 343 
XP_007479356  288 --------------------EFNEDDFDIDFIPPSPEEEVFSPSscssSLKYFSTLKESSTCDkEKNGTKLSDDfLSESE 347 
XP_023352609  293 --------------------EFNEDDFDIDFIPPSPEEGVFSSS--------LSTLKEPSICDeGKNATKLSNYfSSESE 344 
8_pfamImport  281 --------------------KLS-DDYDTDFVPPSPEEESISTAs--sSLKCFSMLQDSDNFDrEKDVLSISKDtLSKPE 337 
XP_008273539  292 --------------------ELEDDDYDIDFVPPSPEEEVSSATs--sSLKCSSMLKDLDTPHrEKDVLSPAQDlLSKPE 349 
EHB03240      288 --------------------ELNDDDY-IDFVPPSPEEESISASs--sSLKCFSALKDLDASDqEEDVLSTSKDlLSKPE 344 
EGW13408      284 ---------------------DDDDDYDVDFVPPSPEEEIISAAs--sSSKCCSMLKDLDDSDkEKDILNTSKDlLSKPE 340 
O88700        295 --------------------EHNDNDYDIDFVPPSPEE-IISTAs--sSLKCSSMLKDLDDSDkEKGILSTSEElLSKPE 351  house mouse
XP_063118705  290 --------------------EHNDNDYDIDFVPPSPEE-IISTAs--sSLKCSSMLKDLDDSDkEKDILSTSKD-LSKPE 345  Norway rat
XP_028907286  293 edcchvqesdsgwdekplvgVIEEDDYDVDYVPPSPEEEVLSSCsssaSLKRISvlkesaiysgrrttpdesnvlsnpkr 372  platypus
ELK18290      344 KMPTQQSNEESSTDCDAKQINL 365 
XP_007479356  348 KTTSLQPIQETSTKHDGKLLTL 369 
XP_023352609  345 KTTSPQLLQETSTKYDGKLLTL 366 
8_pfamImport  338 KITAQEPNPETSTDYDARQISV 359 
XP_008273539  350 KLTPQEPDPETTAGCEARPSPV 371 
EHB03240      345 KMTTQEPNPEISTDCDARQISL 366 
EGW13408      341 EMPAKEPDPGTNTDCDDKQMSV 362 
O88700        352 EMTTHKSDAGTSKDCDAQQIRI 373  house mouse
XP_063118705  346 EMTTPKSDLGTNEDCDAQQTSL 367  Norway rat
XP_028907286  373 ttseerkietamerddkqpplp 394  platypus
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