Conserved Protein Domain Family
DUF4862

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pfam16154: DUF4862 
Domain of unknown function (DUF4862)
This family consists of uncharacterized proteins around 300 residues in length and is mainly found in various high GC Gram+ bacteria, but also in several pathogenic and non-pathogenic enterobacteria (Salmonella, E. coli). Distant homology analysis suggests this could be a branch of Xylose isomerase-like TIM barrel family, but this prediction is currently not confirmed by experiment
Statistics
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PSSM-Id: 495632
Aligned: 11 rows
Threshold Bit Score: 348.596
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q3ID17         4 IVGAYASVPSdaswDQEAEHLFYQQLKNNTLIDGLEVPFTGKLHK-----YDNDWFYNQLDKNWCY-VITCIPGTMGELA 77  Pseudoalteromon...
WP_015884246  10 VVGAYALFAGr---PPEELPAAYRALEGLTTAGALEMPLAEVCGEtpgfdVGPDGLPTLVPAGWGV-VVTCIPAVMGRLA 85  Beutenbergia ca...
WP_012085493  23 LVAGYMLAPT----DPAGEDALFAGLADLD-LAGLEYALPPEGTRs----LEPGWVERNVRPEWDL-LVTLVPTMVPRLG 92  Kineococcus rad...
3_pfamImport   1 -VSAYITAPT----EPAAEDAFFDAVGELD-LAGLEFALQPEGHRt----LDPAWIDAHVPADSDL-VVTLVPAMTVRRA 69 
WP_014401484  11 VVGAYAAVPS----ARDEQEQFYAGLADRGIASALEIPFREDLFD------PIEWQAEHFTHRFEDsVLTLIPGTMQRLG 80  Corynebacterium...
Q6NJR2         7 VIGAYAALPA----TRADQETFYDRLHADLEATGLELPFRDSIHD------DPAWLASQLAGRFTDsIITAIPGTMMRVW 76  Corynebacterium...
WP_013170952   6 IVGAYASLPA----SRSEQEDFYGALAAQPWVNGLEIPFRARISD------DVEWFASQLSEHFSTnMLTPIPGVMHKLG 75  Arcanobacterium...
WP_012732477  23 IVGAYASLPF----DRRDQETYYSLLAEQAWINGLEIPFPGDLTE------SLPWLSGQIADHWDAnTITAIPGTMVNVG 92  Corynebacterium...
1_pfamImport   1 IIGAYPCAPSfhqkSEEEEKEFWRQLSDTPDIRGLEQPCLEHLHP-----LGDAWLLRHTPGNWQI-VVTAIMETMRRRG 74 
2_pfamImport   1 VVGAYLSQPL----EQVKRPAYAHAVLQLPGVTGLEIPLCTTMAR-----DDAKWLMDVLPPGARN-IATLMGACDEAAA 70 
Q21DP8         4 FVGAYATSPSamgwDAAVESEYYNQLKGYSNIKGLEHPFVGKLHG-----EDDEWFLQNISSDWEF-VFTCVPGTMAAIG 77  Saccharophagus ...
Q3ID17        78 KDPHFGIASDNEAGRLNALAFYQQANAEIAKLNNHFNKQVVSHIQIHTAPAITpntsSSV-SALVKSLNELQ-SWDWHGA 155 Pseudoalteromon...
WP_015884246  86 ADPRYGIASTDEDGRAVAVADVRRALDVARRAAELSGRQRVRAVEIHSAPRDG----GGSaTALAASLAELL-SVDGAGA 160 Beutenbergia ca...
WP_012085493  93 TDPAYGLSSTDPGSRARALADLARARDLALSLAEGSGRRRVVGIELHSAPGPR----AGSlDALARSLEEVL-SWDLAGA 167 Kineococcus rad...
3_pfamImport  70 DEPGYGLASHEPEHRALALGDVARARDLARTLADRHGRRRVAAIEVHTSPGPL----RGApDAFARSLEEIL-GWDLAGA 144
WP_014401484  81 SSPTFGLASPVAEGRQAAIDHALIAVERAHRLNDLTGQRTISTLHVHSAPSVT----AQE-DAFAQSLSEL--KDRGLGL 153 Corynebacterium...
Q6NJR2        77 DGGTFGLASPDDDGRNAAIAFTRSIIDSARALDDAAGHRVIAGIHIHSAPSVT----ANR-DQFLRSLTELLeGMDNDDP 151 Corynebacterium...
WP_013170952  76 ENSGFGLASNDGGGRAAALDYLLNASWAIKEVNDAANRQVFTHVALHSAPTGG----AHA-DAFARSL-EVAsQWDWDGA 149 Arcanobacterium...
WP_012732477  93 KNPAFGLASADEDGRAAALEFTDRICKAVQELASRTGRSVIKYVQLHSAPTRG----AHS-DAFARSLDEIA-TWNWSSA 166 Corynebacterium...
1_pfamImport  75 ENRGFGLASSNEDQRQACVAYYRHLYQKITTINAASAGKVI-ALELHAAPQADnpnvAQAtDAFARSVKEIA-GWDWP-C 151
2_pfamImport  71 DDPAFGLASTDPAGRNRALDLLQQARHSIARMTER--GQHVLALEVHSSPTHRdnvdGTS-QEFAASLAQAA-DWDWGET 146
Q21DP8        78 KNPNFGIASDDQAGREEALAFMAKARDAIAKLNAHCGKQVVTAIEIQTAPNRSva-hSSA-ESLKASLTTML-GWDWQGA 154 Saccharophagus ...
Q3ID17       156 KLIIEHCDAYIQNQSSEKGFMRIEDELLAIATVNKQan-nKLGITINWGRSAIEAQSATGPLHHMQLCINENLLSGLIFS 234 Pseudoalteromon...
WP_015884246 161 QLAIEHCDAARPGRRPEKGFLEIEDELAAIDAVDDP----RVGLTVNWGRSAIEGRSASTPEEHVALAASRGRLAGLMFS 236 Beutenbergia ca...
WP_012085493 168 GVVLEHCDALLPGATPAKGFWPLEEEIALVQGFGLPp--eRLGLGFNWGRSAIEGRGPALALEHVRTLAATGLLRSVVFS 245 Kineococcus rad...
3_pfamImport 145 ELLVEHCDAHVPGQAPAKGFLGLDEELAVVRSFGLPp--dRLGMVVNWGRSAIEGRDTTTPVAHTRTVADEGLLRLLVLS 222
WP_014401484 154 DLVIEHCDAYVPEYPGEKRFLTLETEARIAREL-------GLRVTVNWGRSVIESRDAGRPREHVEKLVAAGVLGGVMIS 226 Corynebacterium...
Q6NJR2       152 RLIIEHCDRYNEAVTGEKRFLSIEQEIAIAKET-------GIGITVNWGRSAMEAYDTQLPARHIQALVAEGVFEGVMFS 224 Corynebacterium...
WP_013170952 150 RLVIEHQDEFIEGQDPQKGFLSLADEMRVAADH-------GIQVVINWGRSAIEGRNPDTPLAHVQVAGDAGVLGGVIFS 222 Arcanobacterium...
WP_012732477 167 RIVIEHCDAPREDHEPEKGFLELADECAIAADH-------GVKLHINWGRSCLEDRDATTPLQHITTARDKGVLSGVMFS 239 Corynebacterium...
1_pfamImport 152 DLVLEHCDA-MTSAAPRKGFLPLDNVLEVIADY-------DISVCINWARSAIEGRNTTLPLTHTQQVKQAGKLGALMFS 223
2_pfamImport 147 ALVVEHCDAARSSGGASKGFLTLDEEIDAVETVRALsprtPVMMSINWGRSAIDTRNAGGPLTQIDRLRRHGLLAGVILS 226
Q21DP8       155 RILVEHCDTFLTGQKPAKGFLTLREELAAINDVNQAlg-aNVGVVINWGRSVIETRSTRGALDHIEQAKAAGLLAGLMFS 233 Saccharophagus ...
Q3ID17       235 GASSTSALYG-AWKDSHMPPVMNDFDqlNNKDSELSEHQIKKCMQLQQSAKLdFVGCKISILPHQQPLASRIQY 307 Pseudoalteromonas hal...
WP_015884246 237 GASAVAGVGGgAWEDWHVAPRGAGPTpdDWRDSLLDADRMRRTLAACAGTAPsYVGMKVTAGPASRSVAERVEI 310 Beutenbergia cavernae
WP_012085493 246 GATGEESPWSpPWADTHIPPRGDDPAlaVSAPSLLGVEEIAATLRAAGDVP--HVGLKVAVRPEDADVATRLAV 317 Kineococcus radiotole...
3_pfamImport 223 GATDADTAWGpAWGDMHIPPRGEDPAlaASSASLLGPSEIAATLAAAGDVP--RIGLKWAARPHDAGVAARVAL 294
WP_014401484 227 GAGGEDSVYGpGWADTHLPLVETEPV------SWLTPDRVVECVEAARGHAS-YYGVKVQV-PPTSSVSERLDI 292 Corynebacterium pseud...
Q6NJR2       225 GAGDKENTFGaAWADLHLPHHVDEPA------SLMDDDRIAECLSAAGGAQK-YHGAKIQA-PADVDVATRVTM 290 Corynebacterium dipht...
WP_013170952 223 GAHDQPNSFGpAWNDDHVPLHEDEPT------SLMTAARVDAVATAARAYPVsLLGAKVSI-GADVPLSTRLDM 289 Arcanobacterium haemo...
WP_012732477 240 GAGDKDTQYGyPWVDGHLPAYPDEPT------SWMTPDRIRECAHAALGTPEvYLGAKVCV-PSDSSLNGRVAM 306 Corynebacterium kropp...
1_pfamImport 224 GTT-QSGEYG-EWQDLHAPFAPFCPD------SMMTQEHARELLTCAGTDVLqFMGIKLLEINANADVSHRVAI 289
2_pfamImport 227 GASDRASSYGaPWTDAQLPAAAPDGS--GEASSLLTPQRAVEAMERAGDHLL-FDGVTFAIMPQWTPSQERLRY 297
Q21DP8       234 GVSDQDTEYG-AWQDTHMPAAKAANGtiGAEGSLMTEAEMHACMRAAGDVP--ILGIKLGVRPKDAPLEDRLGY 304 Saccharophagus degrad...
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