Conserved Protein Domain Family
Phage_holin_3_3

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pfam16083: Phage_holin_3_3 
LydA holin phage, holin superfamily III
Phage_holin_3_3 is a family of small hydrophobic holin proteins with one or more transmembrane domains. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as those of the bacteriophages of these organisms. Their primary function appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded, these enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases. LydA and lydB are encoded on the dar operon. The phenotype of a rapid lysis in the absence of active LydB suggests that this protein might be an antagonist of the holin LydA.
Statistics
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PSSM-Id: 495573
Aligned: 25 rows
Threshold Bit Score: 45.6659
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_015830270    20 VINVVFSIIAGTLGYLSRTCSSesPVLFNSNRMLIEAGSSGFVGLLV-LMMCSVSNLGGAATGLCVGFFGWVGAPATIVV 98  Methylovorus ...
WP_012081859    14 AWVLLLSIWGGTAHTIRKIRTGa-LKRFSFSEWIGDIVISGFLGVIT-FYLCEYANIVQPLSAALVGIAAHQGTRGISAL 91  Nitratiruptor...
WP_012205098    37 GIVLGTALLGGLASWWMKVRRGe-ILAWNLSSLIGELCVSAFAGLVA-FWLCEYFTLNPLLTSAIVGMSGHAGAKGLIWV 114 Delftia acido...
CAL62408        15 LWVVGTACLGGTVSFIRKVKQGy-ARAWNITEFIGEVVTAAFAGLIT-FYLCDWSNFDIRVTVAFAGIAGHMGSRAIFQL 92 
4_pfamImport     1 TLCLFLSFIGGLASTLQKLAADvaPVRSIGLEIAKDLVVSLVAGLLA-FFASEWMNFQAVLEAGVITLAGYGGSRVLDRA 79 
7_pfamImport     1 GLTVIAAYLGRLLVHVGEVQRG--RRRFFSTHLLWELVTAIAIGIVA-DGIAHQLGLAGPPRTAAIVAIAYLGPRGLEEV 77 
Q7D1F1          26 FTTIIASLLGRFMWHGNEARKG--RRKFFGIELFWELPVALGMAVIG-ESAAAYADLGQPASTGLIALLAYLGPRGVEAL 102 Agrobacterium...
6_pfamImport     1 VTTMAAALAGRLMWHSTEVRAR--KRRFLSRELLWELPVAVGMAIIG-EAVAAYFELGRTVTTGVVATLAYLGPRGAQVA 77 
jgi:Amico_1099  15 LTPVALAVFGGIAHGLNCKQEE-----FSWWFFFTGIITSAFVGICV-FYVLDGVSIPQGFKSASIAISGYSSHEVLQVL 88 
KAF5030904      17 WLVLALSVAGGMARAAKCGEKS-------LWGWFCSIVVALFAGVVTnLMLVDLTSLPETARVACASVSAYSGGAVLDAL 89 
WP_015830270    99 L 99  Methylovorus glucosotrophus
WP_012081859    92 E 92  Nitratiruptor sp. SB155-2
WP_012205098   115 E 115 Delftia acidovorans
CAL62408        93 E 93 
4_pfamImport    80 L 80 
7_pfamImport    78 I 78 
Q7D1F1         103 F 103 Agrobacterium fabrum str. C58
6_pfamImport    78 L 78 
jgi:Amico_1099  89 K 89 
KAF5030904      90 Q 90 
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