Conserved Protein Domain Family
APD1-4_M

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pfam16041: APD1-4_M (This model is not part of the current CDD release)
E3 ubiquitin-protein ligase APD1-4, middle domain
This entry includes E3 ubiquitin-protein ligase APD1 to 4 from Arabidopsis. They are involved in pollen mitosis II (PMII) regulation during male gametogenesis. This entry represents a functionally uncharacterised domain found in the middle of APD1-4 and in uncharacterised sequences mainly from arthropods. There are two completely conserved C residues that may be functionally important.
Statistics
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PSSM-Id: 522155
Aligned: 32 rows
Threshold Bit Score: 85.7811
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002264526 240 TVQQNIYTSSSYYVAVGNTNL---EEVEVQLNLTVKALQYNT---TG-AYSKCnLTQG-QCSLKLFFPKANAAVITSPGP 311
XP_011052526 397 qANHHVEQDGYYYYIFYSDNDi--VSNDIYAIFDIYKPTFQY---EN-VTKSC-INQT-ECSFRVNPLSADRVIVEIPTK 468
XP_008193249 353 mtLHEVATDGYYYYIFYSDNDi--YSNDIHAIFDIYKPTYWFa-nSS-KGNDC-INQT-ECNFPVSFLSDETVIVEVPTR 426
Q16JE5       414 vtKHEVASDGYYYYIFYSDNDy--VQNDIHAVFDIYKPTFQYs-nIS-ESKGC-VNST-NCSFPISFWSDERVIVEVPTR 487 yellow fever mo...
EDV94065     304 TVKHNITEDGYYYYIFYSDNDl--VRNDIHAIFDIYKPTFQYs-nLS-ESRGC-LNST-DCSFNIGFLSDEIVVVEVPTR 377
9_pfamImport   1 --VHEVTEDGYYYYIFYSDNDl--VKNDIHAIFDIYKPTFQYhsnSS-GTQGC-VNST-NCSFPIGFMSDEIVIVEIPTR 73 
EEC02692      79 NVTYSVKESDFYYMFFASNPPlyvTPNTIVAHFYLDRVVYDErksYKtDTLIC-HNVT-NCSLPLDFMSGQYVVVDMSSN 156
3_pfamImport   1 TVTYKVPGDGYYFFVFNSENEi--qDNFIRIHFAINKTVYDV---SK-PTSSC-LNVTgECQLPLNFWSQQTTVLEMLNP 73 
XP_011049268 541 TVTYRVPLNGYYFFVFNSENEi--qPNYVRVKFDLLKTVYNT---SN-PVHAC-KNSTkECSLPFKIFSNERTVLELPLS 613
XP_002423129 449 KFTYKVPINGYYFFVLSSENEi--qTNYIRIQFEFDKILYNV---SN-PVAAC-TNTTeSCSLPLNFFSWEKTVLEMPLT 521
XP_002264526 312 EQGIPSD---EWYVKLSYGPRWMTYIVGVGGMTVLMLLV 347
XP_011052526 469 DGIEHNEiddAGILISICQPRMGAYMIFPIAILLLILGC 507
XP_008193249 427 DGIEH-EgddITLLVSTCHPRMSVYMIFPITVLFLILGC 464
Q16JE5       488 DGIEH-EeddITFLISTCQPRMAVYIVFPISVLFLVLTC 525 yellow fever mosquito
EDV94065     378 DGIEH-EdddITNLISTCHPRSEIYALFPITVLVLILCC 415
9_pfamImport  74 DGIEH-EeddIAKLYSKCHPRTYVYAIFPISVLILILSC 111
EEC02692     157 ATNLSWT---SDVLTSRCLPRKNVYFVFYFVFGLFLMMA 192
3_pfamImport  74 GPNSDSGd--EFIAISTCQPRSSVYAICLIAAPVLFVLF 110
XP_011049268 614 GNDSQWNd--EYIGVSVCEPRTMVYTICVIMVPLLILCF 650
XP_002423129 522 NNDSMWNq--EFIVVSVCEPRTIVYAACVVAVPILILLC 558
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