Conserved Protein Domain Family
Collagen_mid

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pfam15984: Collagen_mid (This model is not part of the current CDD release)
Bacterial collagen, middle region
Collagen_mid is the conserved central region of bacterial collagen triple helix repeat proteins.
Statistics
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PSSM-Id: 522124
Aligned: 12 rows
Threshold Bit Score: 125.954
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
nioo:CFU_1857 168 VPLLSTGAKGGLAGVVNNGTGIVSTLGAGITNGLGQLGTNPNALGTTLGSTGNVVTGVGNTVQSAGQLVSGLGSGP-LAP 246
1_pfamImport    1 VPGLGSAPTQALGSVVGSVGGAVSALGNGLAGGLGQLGATANPLGTTLGSTGNVVSQLGNAVTGTGNLVTSLGSGP-LTP 79 
Q0K4U3         94 LPLLPTTARESAGDVVIKAGKAVGSLGAGVRDGLGQMGSVDNPVGVTVASTGNVVHDVGEALISGGDLVSGLGTEK-LAP 172 Cupriavidus ne...
Q1LH54         95 VPLVPTGAKNATGDVVINAGATVATLGAGVANGLGKMGAVDNPVGVTVANTGNVVTQTGKTVVSAGDLVQAVGTGQ-LAP 173 Cupriavidus me...
Q0K4U4        127 LPLVPTQTQTGLGDAVASAGDAIGALATGLQSGLGSMPNSDNPVGTTVASTGNVVTELGKTLSSTGTAVSGLGTGQ-LAP 205 Cupriavidus ne...
Q1LH55        137 VPGLPSQTQAGLGGVVTSVGNAVSTLANGVQSGLGNIPNATNPVGTTVASTGGVVSQLGNAVTNAGSAVSGLGTGP-LAP 215 Cupriavidus me...
Q63TR5        145 LPGVNPQTTQALGGIVQDLGGAVSALGSGVTSGIGQLGSSTNPIGTTVASTGGVVSQLGGAVTQTGNLVTSLGTGP-LAP 223 Burkholderia p...
Q63IU2        234 VPGVNGATTTNLGNAVSSLGNGVQTLGNGTAAGLGTLGTSTNPLGPTLTSTSGVVSNVGNAVSSLGGVVTSIGTGP-LAP 312 Burkholderia p...
WP_015877761  198 slpvAAGTTANVGSAVSSLGSGVVSLGNGLAAGLGQVGTASNPLGPTLGSSANLVSDAATAVQSLGNGVAALGGGP-LAP 276 Burkholderia g...
WP_014702702  211 empmigSVTDGAGNIVTHAGNGVGTLSTGLHDGLGNISENDNAIGTTLGGVTGLISDTGRVVSASGQTVAALNTMPvLAQ 290 Methylophaga f...
Q63TR4         93 VPGLGSGVTQGVGATVGSTGGIINAAADALSNGLGQTGSTQNPVGTTVAGLGNVVSATSNTVQGLSQTVQALGTGP-LAP 171 Burkholderia p...
2_pfamImport    1 IPGVSSGVTQGLGNTVSSLGSVVNAAADALSSGLGQTGTTANPVGTTVAGLGSVVSAAGTTVAGLGQTVDSLGTGQ-LSA 79 
nioo:CFU_1857 247 L---AVVTTPVGGLVTQVGAAVSGLGAPLTAALT--TGPVQQITQTVTQAIVPLTSTVTTLTQTVGNATGLNQPVNTLLV 321
1_pfamImport   80 L---APVTSTVGGLVSTLGTTVANGGATLGNVLS--TGPVQQITQTVSSAITPITAVVANTTQTVGNATGLGAPVNTLLG 154
Q0K4U3        173 L---APVTTPVGGLVRHVGIAVHDGSYKLKSVLS--EGPVAQVTNSVSKVIVPLTSKGTDGTQTLGAATHLGEPANGLLY 247 Cupriavidus ne...
Q1LH54        174 L---APVTTPVGGVVQSVGSAVMGAGNQLGTALS--TGAVAELTGSTSKVIVPLTTQLANATQTVGGATGLGAPVNNLLV 248 Cupriavidus me...
Q0K4U4        206 L---APLTSPLGTVVNELGKTVSGTGETLTTVLS--TGAVEQVTTTTSKLIVPITSQLTGAAQTLGAATGLGAPTTSLLA 280 Cupriavidus ne...
Q1LH55        216 L---AALTTPLGGVVSQVGGTVSNVGTQLGTALS--IGPVEQLTGGVSKIIVPLTSTLTNGTQTLGAATGLGQPVNNLLA 290 Cupriavidus me...
Q63TR5        224 L---APLTSPLGGAVSTLGNTITAGGTTLTTALS--TGPVQQLTQTVSSAITPITSMVTGTTQTVGNVTGLGAPVNTLLG 298 Burkholderia p...
Q63IU2        313 L---APVTSPLGGAVGTLGSTVTQVGSGLNNVLT--SAPVQQLETGVSSIINPISNVVSGTTQTIGTATGLGAPVNNLLT 387 Burkholderia p...
WP_015877761  277 L---APVTQALGSLVGTVGGVVGSAGTGLGTTLS--STPVQQIETQAGSLINPITNAVSGVTQTVGTATGLGAPVNSLLG 351 Burkholderia g...
WP_014702702  291 IdekSGVLTTLGGTVDTLGLAVTGFGDYLTLSVVdeNSKLGQLSTKLTAVVRPVIINVDGTVRTVGQAVVVTPAVLGLVG 370 Methylophaga f...
Q63TR4        172 L---SPVTTPVAGALATAANGVNAAGTMLGNALS--TGPVQQVTQPISSALTPLVITAGQVTQTVGTTTGVGQPVSGLLQ 246 Burkholderia p...
2_pfamImport   80 L---APLTTPLGTLLNTTANGVEAGGTMLGNVLS--SSQVQAVTQPLSSAITPIVTTAGQATQTAGSATGLGAPVSGLLQ 154
nioo:CFU_1857 322 TAGGGVSSLGGALT--AANVPVVSSLGGVVSNVGATVAGLGTN 362
1_pfamImport  155 TIGGSLNQAGSLIAtkGGGNPVTAGLGSTVSATGNTVASLGGL 197
Q0K4U3        248 KVGNTVAAGGSMIS--NTHAPVVSPLGGVVTEAGKTVAAAGAL 288 Cupriavidus necator H16
Q1LH54        249 TVGNTVASAGSMIT--NTNTPIVSPLGGVVTETGKTVAVAGGL 289 Cupriavidus metallidurans CH34
Q0K4U4        281 AVGGALATAGTTLQ--QTNTPVVSGVGGVVNATGTTVASLGGA 321 Cupriavidus necator H16
Q1LH55        291 TVGGALAVAGTTLT--NTNTPVVSGVGGVVTGVGNTVASVGGV 331 Cupriavidus metallidurans CH34
Q63TR5        299 TIGGGLNQAGALISk-TGNNPVTTGLGQTVSATGNTITSVGGL 340 Burkholderia pseudomallei
Q63IU2        388 TVGNGLNAAGAKVSg-STNNQVVQAVGGVVSQLGNTVTSVGGL 429 Burkholderia pseudomallei
WP_015877761  352 TLGAGLGSAGAALAn-ASGNPLGQDLGKVVTQLGNTVTSTGGL 393 Burkholderia glumae
WP_014702702  371 KVGSAVVVLGEKIG--GIDNIVLADAGGVVEGVGHLLVNLDGN 411 Methylophaga frappieri
Q63TR4        247 QVGGAISSAGTQIAgtSPSQPLVGDVGQLVSAVGNTVTNAGGL 289 Burkholderia pseudomallei
2_pfamImport  155 QLGGAVASAGTQLGs-TSSQPLVGDAGKLVSSLGNTVTNAGGL 196
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