Conserved Protein Domain Family
CiPC

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pfam15800: CiPC (This model is not part of the current CDD release)
Clock interacting protein circadian
CiPC is a family of proteins found in eukaryotes. The protein was identified in sheep as a gene-orthologue involved in regulation of the circadian clock. Proteins in this family are typically between 220 and 400 amino acids in length.
Statistics
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PSSM-Id: 522030
Aligned: 8 rows
Threshold Bit Score: 340.268
Created: 17-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_016283751  38 SDKDSGFSDGSSECLSSAEQMDSEDMLNTLSWHGEDGPR-QNSTIASNSFPALSPMVVMKNVLVKQ-------G-RNSSH 108
XP_005986588  38 SDKDSGFSDGSSEYLSAAEQTSSEDMPNFPSWILASRAQ-QNTMLVNSPFSALSPMFFMKNVLVKQ-------P-ICDQL 108
XP_001508288  38 SDKDSGFSDGSSECLSSAEQMDTEDMLNPLGWTGDDGSR-QKPDVGSSSFPALSPMVVMKNVLVKQ-------G-SSSSE 108
XP_003260842  38 SDKDSGFSDGSSECLSSAEQMESEDMLSALGWSREDRPR-QNSKTAKNAFPTLSPMVVMKNVLVKQ-------G-SSSSQ 108
XP_006632440  37 SERDSGFSDASSEYLSAVEQTDAEDGQKTSAQSIKSKSQlPQLAVMGGGYPGLSPMIIMNNVLLKQ-------AsNCPPA 109
NP_001314832  11 TDKDS---DASSGYFSALDQTDIEDIGPTGSAALNMPTA-PRVPFITGSHPGISPMIVMNNFVLKQ-------PnSTAPA 79 
XP_064408768  55 CESDSGFSDTSSEHLSNAEQADLPDI--KIDWSSVSSRL-DELQRVYGPFTGLTPVYIVKNVLFKQpftvqtnN-QILHT 130 coelacanth
XP_017207435  57 SEKDSGYSDTGSDSL----QTDADDRQSSASEPQNHKGSlHGSHILVSGTPELTPIFIIKDVVLKQp------GqSGQDH 126 zebrafish
XP_016283751 109 LQS----WTVQPSFEVISTQPQLVFLHPS---VPPPV-----SPYL--AGEKKNDSRNYLPILNSYTKIAPHPGK----- 169
XP_005986588 109 VQS----WAVQPSIEVIPAQPQLLLVQPA---VPQTI-----NSRS--TRDNKADSGSYLPILKSYAKIAPHPGK----- 169
XP_001508288 109 LQS----WTVQPSFEVISAQPQLVFLHPS---VPPPV-----SPFH--AGEKKSDSRNYLPILNSYTKIAPHPVK----- 169
XP_003260842 109 LQS----WTVQPSFEVISAQPQLLFLHPP---VPSPV-----SPCH--TGEKKSDSRNYLPILNSYTKIAPHPGK----- 169
XP_006632440 110 VKP----WGFQPAIEVIP-QPQVVFLQPV---ISNGI-----TNTQkgPQDKRRRSQKYLPILKSYPKIAPHPGE----- 171
NP_001314832  80 LKP----WSLNTSLDVVP-QSQLLYLQPVakcLPSGD-----STSQ--SFDKQKHSKKHAPLQSTFQKIAPHPAQ----- 142
XP_064408768 131 QLA----WGGQHALSAASGQPRVLFIQQP---VAAST-----LKSP--VSNKRKERDTYLPILNSYPKIAPHPDKsrdnq 196 coelacanth
XP_017207435 127 ILPsslsWGGGTAGGQAP--THVLLLQQPginQSTPLhilksHPQRseSKNAKKSKNTYLPILNSYPRIAPHPSK----- 199 zebrafish
XP_016283751 170 ------RglaLNPEERG----ETSMQKRVCTERHRTSLSSTG-PTKTSILPSDPSTPVPPStklAQDSVRQSLSSLVASR 238
XP_005986588 170 ------K---LTPGKDAi---SPRDGRRGLSDSHKKQKRVETsRTSSAFRSSSAAQPFSPQ---SSGTNKQQNSEILPSN 234
XP_001508288 170 ------RslsLTLEERG----EASDRKRTCTDRHRTSLSSLG-PTKTDVSPSSPSA-VPPDlrlAQDSARQSSSSSLAGG 237
XP_003260842 170 ------RglsLGPEEKG----TSGVQKKICTERLGPSLSSNE-PTKAGAVPSSPSTPAPPSaklAEDSALQGVPSLVAGG 238
XP_006632440 172 ------S-----SSERS----ASGSSERSGSASARVDRASAL-RHRRHSREKQLSR---LS-----STASPTPSGLPLPL 227
NP_001314832 143 ---------------------EPTVDQGPGAINRRSSHSHAG-RHHRHRYEDKPFHNFPLK-----QDVSETFSGYGVDP 195
XP_064408768 197 angqtsEnhgILRTDRTa---GRSKNKRFCVEDTRVSSSESAmPKNNEVPSAAPERQEQPSp--PTASIQQASNAAFKLD 271 coelacanth
XP_017207435 200 ------KateKPTTNRGsnteEHSLSKRVCTEEKREKVSTTT-QASKQHPHKQPENNLL--------SNSHSLSRSLSAG 264 zebrafish
XP_016283751 239 SLRTVPDSQEVLSSTMAKAPNLTFASPASPLGSSDSTLHGLESPMPLSM---LSAPYSPP-GAGDQLCHS-PETFLEQrQ 313
XP_005986588 235 RTQTNSELACNGHTGRQEEDCFTPTLESGHLQLSANAASDEALFLCPSP---SVGQIASA-QELGPAAAT-SGQMAQQ-Q 308
XP_001508288 238 ALRTVHSIQLGPSGRLVKGPRLTPEVPPSPPFTVDGSGRGAENTVSPST---PAAPSSPP-ATVGQLRRT-LEAFPEPrQ 312
XP_003260842 239 SPQTL---QPVSSSHVAKAPSLTFASPASPVCASDSTLHGLESNSPLSP---LSANYSSPlWAAEHLCRS-PDIFSEQrQ 311
XP_006632440 228 TPEPSTRKHHS--SLSKTESASSGGQPTPPASSQEAPPPARSPGLAPVP---PAAASPSR-TDPDPDPEE-KGSVLEK-R 299
NP_001314832 196 SISSLEEIGHTVEDMHVKDSPSRLSDFQEPHTTTSPFSLCTDSFLAAFPqkfPKTSISQS-SDVESIPEA-----LSPsS 269
XP_064408768 272 RFVQSEGYRACSSPHLG-----VPLSQSPAFSSAELSPSSAALEFPVGMl--PSGTGDRKgANKGSKKHA-PGIV----- 338 coelacanth
XP_017207435 265 --------HETSTDTHKNRSPCRPSSPSASLSVSSPSVSSTQIPSPPSSvdlIQTRKEPHkHCPGQKSDSgKGSHTFKgT 336 zebrafish
XP_016283751 314 SKHRRFRNTLVILHRSGLLEITLKTKELIRQNQATQIELDRLKEQTQLLMEATKGN--APQAWAKLQ 378
XP_005986588 309 SKQKRFQNTFDVLHKSGLLGITLKTKELARQNQSTQNELDQLKEQTRLFVEVLQSN--NPLVLAQLL 373
XP_001508288 313 SKHRRFQNTLVVLHRSGLLEITLKTKELIRQNQATQVELDRLKEQTQLLVEAAQSN--APQA----W 373
XP_003260842 312 SKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQVELDQLKEQTQLFIEATKSR--APQAWAKLQ 376
XP_006632440 300 NKRKRFCNTYNILHKSGLLGITLRTKELIRQNRKTQSELDRLKAHADLFVEAIRSG--DPQVWTKLQ 364
NP_001314832 270 SKRKRFCNTYNILNRSGLLGITMRTKELIRQNKRSQAQLQSLQAQTDLFLEAICSR--DPKVWTRLQ 334
XP_064408768 339 -KQKRFHNTVEILSKSGLLGITLKTKGLIRQNRNTQREIDELKEHTRLLCKAMQSN--DSQAWLKLQ 402 coelacanth
XP_017207435 337 ARHRRFLNTVEILSQSGLLDITLRTQDLLRQNAATDRDIAQLRQHAQLLFQAAQAGvdAPAAWEKLQ 403 zebrafish
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