Conserved Protein Domain Family
RBM39linker

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pfam15519: RBM39linker (This model is not part of the current CDD release)
linker between RRM2 and RRM3 domains in RBM39 protein
A conserved linker between the second and the third RRM domain in human RBM39 (CAPER) protein, also present in other RNA binding proteins, especially those involved in RNA splicing. This linker was implicated in interactions with ESR1 and ESR2. Preliminary results from JCSG suggest that this is a structured domain with a well defined fold.
Statistics
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PSSM-Id: 521894
Aligned: 83 rows
Threshold Bit Score: 69.6026
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_003558785  369 LDDDEGGGLALNASSRALLMQKLDRSGVttsltsgmgaaglntsvtlPavsvlgAPPAAPALQPTLTGlgli-------- 440
XP_015457179  328 NDELERTGIDLGTTGRLQLMARLAEGTGlq----------------iPp-----AAQQALQMSGSMVAmaaataamnpgl 386
13_pfamImport   1 NDELDRSGVDLGTTGRLQLMARLAEGEAt------------------Sp----------LTPVAPSPSar---------- 42 
8_pfamImport    1 GEEQERAGADLGSTGRLQLMAQLSEGTGlp----------------mPp-----SAQQALQMSGAIALgamaav------ 53 
XP_040059062  308 SDELERSGIDLGTTGRLQLMARLAEGTGlq----------------mPp-----AAQQALQMSGVIAMgamaavs----- 361
XP_011473497  317 NDELERSGIDLGTTGRLQLMARLAEGTGlq----------------iPp-----AAQQALQMSGAIAIgamaavsaa-mn 374
XP_040506807  184 SDELERTGIDLGTTGRLQLMARLAEGTGlq----------------iPp-----AAQQALQMSGSLAFgavadlq----- 237 chicken
XP_056667766  184 SDELERTGIDLGTTGRLQLMARLAEGTGlq----------------iPp-----AAQQALQMSGSLAFgavadlqt---r 239 gray short-tai...
XP_011600843  326 NDELERTGIDLGTTGRLQLMARLAEGTGlk----------------iPp-----AAQQALQMTGSMSFptisgpp----- 379 torafugu
XP_007906874  331 SDELERTGIDLGTTGRLQLMARLAEGTGlq----------------iPp-----AAQQALQMSGNISL------------ 377 elephant shark
XP_003558785  441 ---pgasVPVISQPIATAPPSECLLL----------KNMFDPAVETDPDF 477
XP_015457179  387 sfnlnmpPNQALNLPSQPIATHCFQL----------SNMFDPHSENDPGW 426
13_pfamImport  43 -----wrPTPALNLPSQPLATHCFQL----------SNMFNPNSENVPGW 77 
8_pfamImport   54 --saamnPGLNMSIPSQPLATHCFQL----------SNMFSPNSELPPGW 91 
XP_040059062  362 aamnpnmQSSAPSVPSHPLATHCFQL----------SNMFHPSCEDPPGW 401
XP_011473497  375 pslnvnmNSGALNLPSQPLATHCFQL----------SNMFNPSSENTFGW 414
XP_040506807  238 trlsqqnEVLAAAASVQPLATQCFQL----------SNMFNPQTEEEAGW 277 chicken
XP_056667766  240 lsqqsevTALAAAASVQPLATQCFQL----------SNMFNPQTEDELGW 279 gray short-tailed opossum
XP_011600843  380 -avptpsPSQALNLPAQPLATHCLQL----------SNLFNPQAENDPSW 418 torafugu
XP_007906874  378 --------------------GAMAAVtdlqarliqqTEALNPPLAMStpp 407 elephant shark
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