5Y88


Conserved Protein Domain Family
NTR2

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pfam15458: NTR2 (This model is not part of the current CDD release)
Nineteen complex-related protein 2
Family members include the NTR2 or Nineteen complex-related protein 2 found in fungus and plants. NTR2 proteins form a complex with the DExD/H-box RNA helicase Prp43. Along with NTR1 it is an accessory factor of Prp43 in catalysing spliceosome disassembly. Disassembly of the spliceosome after completion of the splicing reaction is necessary for recycling of splicing factors to promote efficient splicing. NTR2 and NTR1 associate with a post-splicing complex containing the excised intron and the spliceosomal U2, U5, and U6 snRNAs, that supports a link with a late stage in the pre-mRNA splicing process.
Statistics
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PSSM-Id: 521857
Aligned: 64 rows
Threshold Bit Score: 49.7434
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5Y88_V        76 SHYEDLYHSKKNTNASTr-----------NKDDLLILNmedlmegnhhllsdsseagssseGEHISSIPTRGEIAKLKAQ 144 Saccharomyces c...
OEJ84289     104 KTINDLTVNINSTPTPTptf------hslAEPKPEVWNmddme----------------------deedSDLVVLTEKQK 155
XP_002552881  80 DITEIAYRKPL------------------PKSGVQIMNleelg--------------ddceDDTLEGVPTRREIESIRTQ 127
XP_022629830  79 TQYEIPYSAPA---------------------RPQILNlenmseeeq------ndedfdtsASDWKTVPSESEIETIRKR 131
SCU83114      76 RTHDITFSAKQ---------------------NSQILNldnlded----------fddgdeDELMFSVPSHSEIKRIREL 124
XP_003647532  95 HDYTDLFVISKe----------------pKHVQEKIINlegis--------------dvddGDESE---LKEKVQEMRRH 141
Q754H1        47 AGYADLLQAPGrsp-------------kaVPQALRTMNledl---------------sdddDDDAYPVFSKQEILDIKKL 98  Eremothecium go...
XP_003687036  85 LKYNQLYNRKNRLNEIPnenvanandnsnEKTNAIIINieemeq-----------ngliepDNDDRGPKMKPSVKKMDKY 153
XP_022463513  74 PSSNILYHDEIdllkq--------kkerkDDTQEVVLNmedmv---------------------ergdiSDTEVVSPNNE 124
SMN19292      87 DTYGSIYKIKA--------------------NNSAVLNledeceln-------eieqndmdYIDDNNILSISEIDEIKKE 139
5Y88_V       145 KslsR-RKISES-----DVT-------TerDYVKLldsedkreimetirLNgglkRNN--------------------EK 191 Saccharomyces c...
OEJ84289     156 EmllQkKMTHGTfsslgSRNsqrdilkQenEYAKL--------------LN----QDDleelnaiynkgkgatatldnAK 217
XP_002552881 128 RamlQ-QQTDTLktgfyDSSknp-vehDehQYIKL--------------LS----KDDkhdlmeiiggesqgakdvqdSY 187
XP_022629830 132 RailQeQQSDYSgtgfyASKgkmtskeNerSYVKL--------------LS----RDDkqdlldvig---dgrkvdqeDS 190
SCU83114     125 RalqQ-QRVSPTgtgffDSShekpvefNeaAYVKL--------------LN----EEDkldlletlg--ertagndktDV 183
XP_003647532 142 KivmD-QKYRTShtg-fyDHaeksleyDekAYVRL--------------LD----SDDkeqlneilgkrrtntppgkyAQ 201
Q754H1        99 RaerQqe---------aAAGsavdqqfSekSYVRM--------------LD----REDkedlqellgr------------ 139 Eremothecium go...
XP_003687036 154 NsksKlnv-----------------mkEekLYAKL--------------LD----DDDkieimeiidkqggldkdndkDA 198
XP_022463513 125 KirpKtnv-----------------qlEetKYFKM--------------LN----SEDksdiidtinrqggvekdnerDD 169
SMN19292     140 KeklRkk--------fqQKQevekgrpSekDYAKL--------------LT----SEErldlldtykdnggitkaneyND 193
5Y88_V       192 EI---------TNFSDDEMQGFQDE--------------MLALTDNQIAIQKDSKRKIIEKAIN----E-VPYRTNEEWE 243 Saccharomyces c...
OEJ84289     218 KLqipgngrlsEDEDRLDQALLSNEhfvedhntmmgghsKLALSEREKQIESLQRKRYITEQLDayg------------- 284
XP_002552881 188 MD------------AYLEIHGLEDG--------------RLALSKNDLDRDEQERKLAITSALKn--------vEGDEWE 233
XP_022629830 191 TT----------MPVDTLPSGFEDS--------------RLALSEGELQKDEMDRRRAILSAINda-------hVEDEWE 239
SCU83114     184 LS-------------EPMSNAFDDK--------------PLALSEQELRRDESERKTTILNALDd--------vQDNEWE 228
XP_003647532 202 EF----------DDDAAAATMVEDE--------------KLALTKSEAIDQTLRRKKEIEAALN------HHDDEGDEWE 251
Q754H1       140 --plhkglsedEGPQEAEPEMISDG--------------RLALSKSELSAEALRRKISIEDALN-------ADLGGGVWE 196 Eremothecium go...
XP_003687036 199 SG------------FDFNMTEFEDD--------------RLAVTDRERQIYKMKRKKLIEEALEvnhlEdNTRPNSNEWE 252
XP_022463513 170 IA-------------DFVMTEFEDE--------------RLALTSKELRRQVELKRRLIKETLQn---DeHGSSDEQEWE 219
SMN19292     194 IK----------STEDYTDSIADDG--------------KLALTKNEMLLEKQNRKYLIEQAIN----EkEVDDDQNNWE 245
5Y88_V       244 TQLLSKgninksNEKII---------TPLPVLFPDddesgnsIER--------INEMV---SKICLQRKKVEMRLQALEK 303 Saccharomyces c...
OEJ84289     285 -----------------------dhvVRAPHPKDM-------TQR----------------GSVLQIRQELQNSQETLVS 318
XP_002552881 234 ARQLEKmdrglsL-------------IAHPILHEN-------DFEleel-vseLDSML---LSIQTKKKMFISQRDSVQK 289
XP_022629830 240 TQQIGKtdnnsvA-------------VALPIPYQG-------KIDlesv-vsaLQDHT---LKVQAKKKILVARKVSLET 295
SCU83114     229 SQQISKnengysI-------------ASLPITHGD-------DFSldsv-lseLKTLV---LKAQQKEKINFLRRDALQG 284
XP_003647532 252 TTQLNKfdkttnSTLK----------RQLPRRFKA-------QAEdihtieemLQTLLp--SNASIRISLLQKQLDLVQA 312
Q754H1       197 STQLNKhsrtaeTR------------FYKPILSSA-------VSKyddlssaqLAVNLlgdGKTSQKMSLLHKQLAMVHS 257 Eremothecium go...
XP_003687036 253 DQQLTKvfnnehLVAEKkdsrikalqSQLP--HPI-------ILEdptniieyIRSIQ---IDLEKKKQMLKIQQISLSN 320
XP_022463513 220 EHVLEKnqvkldQG------------LKLPELSEL-------DEKdin---edIDTLL---KRQNVKLDRVKLQNKHAQE 274
SMN19292     246 QNIVQNgslgssTVKINv-------kARLPALWKD-------IEDfeg--dsfIDTEL---AKSRIKLKTKELQRRKLQE 306
5Y88_V       304 TKIDLEKSKA 313 Saccharomyces cerevisiae S288C
OEJ84289     319 ELDEIKLELS 328
XP_002552881 290 ENKKLCEAQD 299
XP_022629830 296 QKNEFLREKD 305
SCU83114     285 ERETLLNLRS 294
XP_003647532 313 ELAALNIRKV 322
Q754H1       258 EISALTERQN 267 Eremothecium gossypii
XP_003687036 321 EVITLNEKID 330
XP_022463513 275 EYHTLEKERD 284
SMN19292     307 ERSGLIQKGN 316
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