4B6H


Conserved Protein Domain Family
PNRC

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pfam15365: PNRC (This model is not part of the current CDD release)
Proline-rich nuclear receptor coactivator motif
The PNRC family, proline-rich nuclear receptor coactivator, is found in eukaryotes. Studies in S. pombe show that the proteins carrying this motif are mRNA decapping proteins. In addition, this motif is found in Saccharomyces cerevisiae two intrinsically disordered decapping enhancers Edc1 and Edc2, which show limited sequence conservation with human PNRC2. This motif in the N-terminal domain serves two purposes: it enhances the activity of the catalytic domain by recognizing part of the mRNA cap structure (i.e. activation motif) , and secondly, it directly interacts with the decapping activator Dcp1. Mutation in the (YAG) sequence led to los of activity of activate the decapping complex. Hence the activity of the family members involved in mRNA processing mechanisms depends on YAG activation motif that is 11-13 residues N-terminal of a conserved LPxP Dcp1 interaction motif.
Statistics
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PSSM-Id: 521808
Aligned: 92 rows
Threshold Bit Score: 23.1047
Created: 16-Feb-2025
Updated: 25-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4B6H_C       107 YAGAKF--SEPPSPSVLPKPP 125 human
4_pfamImport   1 FAGTSF--VSPPEPCMLPMPN 19 
XP_009018093  75 YAGAKF--GDAPEPVMLPLPP 93 
XP_032593122 220 FAGSKC--FDAPAPTALPKPP 238
XP_001528584 177 YAGSSF--HSSPAALALPKPK 195
XP_006690324  90 FAGSSF--HSSPEALNLPKPT 108
P53080       153 YAGSTFatNGPREAKNLPKPS 173 Saccharomyces cerevisiae S288C
XP_003668883 140 FAGSTFanNIPLE-SSLPKPS 159
Q6FQE3       332 FAGASFatDVPNE-SNLPKPS 351 Nakaseomyces glabratus CBS 138
XP_002547104 194 YAGSSF--HSSPDAFNLPKPS 212
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