Conserved Protein Domain Family
DUF4585

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pfam15232: DUF4585 (This model is not part of the current CDD release)
Domain of unknown function (DUF4585)
The function of this protein domain family is yet to be characterised. It is putatively thought to lie in the C-terminal domain of the DNA nucleotide repair protein, Xeroderma pigmentosa complementation group A (XPA). The function of XPA is to bind to DNA and repair any mismatched base pairs. This domain family is often found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved DPE sequence motif. In humans, this protein is encoded for in the chromosomal position, Chromosome 5 open reading frame 65. Mutations in the gene lead to myelodysplastic syndromes, where there is inefficient stem cell production in the bone marrow. This suggests that the protein may have a role in forming blood cells.
Statistics
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PSSM-Id: 521715
Aligned: 11 rows
Threshold Bit Score: 83.1974
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_069044957 1143 PFPLTQRKLLQDPESGQYFVVDMPV----QVKTKTFFDPETGKYVQLSIRS-TEGGLSH----ASSVEVLNTPsYVLYPG 1213
XP_004942192 1352 SPSLTQRKLLQDPDSGQYYVVDLPA----EVNLKTFYDPETGKYVQVSVPS-SEGNVYQ----PSSSEIRNSP-YASYPR 1421
XP_008116483 1475 PPPQTQRKVLLDLSTGQCYVVDAPLqqqqQPQKRRLFDPETGQYVEVPFPG---AQQPPppaaMAPMTLPISS-LTLGPA 1550
XP_011490829 1182 AAPQTQRKMLLDPTTGHYYLVDTPL----QVTTKKLFDPDTGQYVEVPMPH---SPVAP----VTPVHLSLSP-LALSPP 1249
XP_002710292  872 PAAAQPGKVLVDPESGRYYVVEAPR----QPRLRLLFDPESGQYVEVLLP------PSS----PAPPRHVYAP-MAVGPG 936 
XP_005599418  878 PGAARPGKVLVDPESGRYYFVEAPR----QPRLRLLFDPESGQYVEVLLP------PSP----QGPTRRVYTP-LALGPN 942 
3_pfamImport    1 QYNQSPRKVLLDPETGKYFYIDMPV----QPLRKMLYDPETGQYVEVLIPQqALSHSGV----YQNPASPYSS-FMN-PG 70  
XP_021324860 1168 SVAASSRQLLLDPETGRYFYVDMPQ----LPQRKMLFDPETCQYVEVLLPQqALPSAVI----PTPCAIPFAS-LHI-PP 1237
XP_064418642 1634 SFPLTQRKLLQDPESGQYFVVDIPI----QVKTKTFYDPQTGKYIQVSIPS-SDSNLSR----ATSLEVLNAP-YVLYPG 1703 coelacanth
XP_011610681 1186 GDPQTQRKMLLDPTTGHYYLVDTPV----QPPTRRLFDPETGQYVDVPMPPsPAAHVAP----ITPVPLSVSP-LTLSPA 1256 torafugu
XP_036772511 1260 PYPATQ-KVLQDPQSGEYFVFDLPL----QVKIKTFYDPETGKYVKVPIPS-SEGGSPE----PSPPEALAAP-YMLYPR 1328 Chinese pangolin
XP_069044957 1214 FLP 1216
XP_004942192 1422 ALP 1424
XP_008116483 1551 AAG 1553
XP_011490829 1250 AYT 1252
XP_002710292  937 FYP 939 
XP_005599418  943 LYP 945 
3_pfamImport   71 MYS 73  
XP_021324860 1238 MYT 1240
XP_064418642 1704 FLS 1706 coelacanth
XP_011610681 1257 AYA 1259 torafugu
XP_036772511 1329 LQP 1331 Chinese pangolin
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