Conserved Protein Domain Family
SHLD1_C

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pfam15021: SHLD1_C (This model is not part of the current CDD release)
Shieldin complex subunit 1, C-terminal domain
SHLD1, also known as RINN3, is a component of the shieldin complex, a vertebrate-specific protein complex which functions as a downstream effector in the 53BP1 pathway, regulates NHEJ (non-homologous end joining). This entry represents a conserved helical domain found at the C-terminal of SHLD1.
Statistics
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PSSM-Id: 521608
Aligned: 11 rows
Threshold Bit Score: 197.304
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_004061828 108 GQSE-KEEDDGLRKSLDRFYEMFGHPQPGSANSLSASVCKCLSQKITQLRGQESQKYALRSFQMARVIFNRDGCSVLQRH 186
3_pfamImport   1 RQSEtEEEDDGLRKSLDTFYEAFGCLQPASGNPLSARVCQCLSEKITELRGQESREYALRSFQMARVVLSRDGCSVLQRH 80 
Q9D112        85 GQLEtNEEEDGLRKSLDRFYEAFAHPLPGSGDPLSASVCQCLSQTISELEGQESQRYALRSFQMAQVIFSRDGCSILQRH 164 house mouse
XP_007626000  87 GQLEtSEEEDGLRKSLDRFYEAFAYPLPGSGDQLSVPVCQCLSQTISELQGQESQEYALRSFQMARVIFNRDGCSILQRH 166
XP_016283390  83 NQPEpV-KDDGLRKSLDHFYEVYGQALPPPEDALSTAVSRRLSQKITELSSQESQKYALHSFQMAQVILNRDGYSVIQSH 161
2_pfamImport   1 MYEHsSMEDASIRKSLDSFYKTYCKKQPDSMDPTYEAASQCLLKKISELADRDGTKYTLRCLQMAQLVLNRDGCKVFPNH 80 
XP_005042917  98 MYERdGAEDPSIRDSLDGFYKMYCRKQPERKDPTYQAASQCLSQKISELEQKGGTKYVSRCLQMAQLVLNRDGCKIFPNH 177
XP_023616086  85 GQPEtKAEDEELRKSLDRFYEMFGHPPPASRNPLSASVCQCLSQKIDELQGQESQKYALRSFQMARVIFNRDGCTLLQRY 164
ELV13419      85 SELEtKEEDEELRKSLDRFYETFGHPQPVSRNSLSASVCQCLTQKITELRGQESQKYTLRCFQMARVIFNRDGCSALQRH 164
1_pfamImport   1 GQTEtKAEDDGLRKSLDRFYEMFDHPHPAARNPLSTSVCQCLSQKINELKGQESQKYALRSFQMARVVFSRDGCSVLQRH 80 
Q2KIJ1        85 GQPEtKEEDDGLRKSLDKFYEVFGNPQPASGNSLSTSVCQCLSQKINELKDQENQTYTLRSFQMARVIFNQNGCSILQKH 164 domestic cattle
XP_004061828 187 CRDTHFYPLEEGSTSLDDEKPNPGLSKDITHFLLQQNVMK 226
3_pfamImport  81 ARDTHFYPLGDRSASLEDEKPIPGLSKDIIHFLLQQNVLK 120
Q9D112       165 SRDTRFYPLEQEGSSVDDEEPTPGLSREVIRFLLEQTVMK 204 house mouse
XP_007626000 167 SRETRFYPLEQGSNSLEDVELTPGLSREIIRFLLEQPVMK 206
XP_016283390 162 CKDVHFYPLEEGNASQDTQKPTPGLSTDVISFLLKESKTK 201
2_pfamImport  81 PTTACFSKPAEGEVMLEDRKRIPGLSDDVLQFLFKQTQIE 120
XP_005042917 178 SPSTCFSKPAEGEVLLENRRRTPGLSDDILQFLVKQTQAE 217
XP_023616086 165 SRDARFYPLGEGSQSLDDEKPTPGLSKDIVRFLLQQNVME 204
ELV13419     165 SRDVRFYPLGEGSASLDDEKPTPGLSKDVVHFLLQKNVMK 204
1_pfamImport  81 SKDAHFYPVGEGSVLLEDEKPTPGLSKDIIHFLLQQNVMK 120
Q2KIJ1       165 SRDAHFYPVREGSTSLQDEKLTPGLSKDIIHFLLQQNLMK 204 domestic cattle
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