Conserved Protein Domain Family
PBP-Tp47_c

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pfam14888: PBP-Tp47_c 
Penicillin-binding protein Tp47 domain C
Domain C is the largest domain in this unusual penicillin-binding protein PBP), Tp47. This domain is mainly characterised by an immunoglobulin fold with two opposing beta-sheets that form the typical barrel-like structure. In contrast to the classical immunoglobulin fold, however, this has an additional beta-strand inserted after strand 3. Also, the strands are connected by rather large loops. Helices are inserted between strands 2 and 3 and between strands 4 and 5. Domain C interacts with domain B via a surface that has a slightly concave, goblet-like shape. Tp47 is unusual in that it displays beta-lactamase activity, and thus it does not fit the classical structural and mechanistic paradigms for PBPs, and thus Tp47 appears to represent a new class of PBP.
Statistics
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PSSM-Id: 494642
Aligned: 8 rows
Threshold Bit Score: 250.116
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CDD73626      214 ENTNGLKIAAKQADGSYTFGKRKTGTDSGVKDVSLAKA-S--KTVASVvtdEKk--KGSYGEFLRVDINSedgaaanEgY 288 
CDE53632      319 ADTNGLKEAVKNSDGTFSFGERQTGTDSGIKDSELKTA-DisTLGVEV---KD---SSSYGDFIRVDLTG-------N-Y 383 
CCZ64177      750 KNTNGLKKVSLNADGTFSFSAAQTGTASGLKDTELKTA-DvtNMGVEV---VD---SSKFGDFLRVDLKK-------N-Y 814 
CDA62639      224 ADTNGLKVATKNADGTYSFAARKTGSNSGIKNEAQKTV-DetKIVKTV---RSaddAETYGAFIRVDLTG-------DaY 292 
CDE44202      214 ANTNGLKVAEKQADGTFKFGKRATGTDSGIADQAQKEVsK--DIVVKV---QEa--NGSYGEFLRVDLVNpes--gtNaY 284 
2_pfamImport    1 -KTNGLKEATKNEDGSFSFGARATGSDSGLKGNALKVA-E--GIEPEV---KAa--NGSYGEFLRVDLNG-------N-Y 63  
1_pfamImport    1 -NTNGLKTAEKQDDGSFTFSERTTGSYSGLKDTQLAVA-A--DITPNV---REtkdVGSFGEFIRVDLNG-------N-Y 65  
WP_012738613  202 ADTNGLKTAVKNADGTYSFSARQTGSGKSFAEQDISVA-A--NITSTV---KDa--TGSYGEFLRVDING-------DgY 266  Lachnospira e...
CDD73626      289 GPLGSRMQAVKWTYYGT-DSTRTKAIASYGTKFAADNWMHKSMGIQLGLTESYRSELPSGTDGTGYWNVTIYGLGYEDAS 367 
CDE53632      384 GDLGANMQSVIWKYYGE-NDTTGTPLAVYGTKFAADNWMHKSMGIQLGLTESKRCTLPEGYDGSGNWTVTICALGYADTV 462 
CCZ64177      815 GDLGSAMQSVEWTYYGS-GDT-A--LATYGTKFAADNWMHKSMGIQLGLTDSLRCQLPQGTDGTGKWVLTIHALGYTDTK 890 
CDA62639      293 GDLGANMQTVRWDYYGN-DSTYTNKLATYGTKFAADNWMHKSMGVQLGLTKSLRCQLPEGTDGTGYWKVTVYALGYQDYT 371 
CDE44202      285 GELGANMQAVRWDYYGTkDAEKDQPIVSFGTKFAADNWMHKSNGIQLGLTNSLRCQLPEGTDGTGIWKITVYALGFKDFT 364 
2_pfamImport   64 GGLGSGMYATRWTYYGN-DSTYTTALASYGTKFAADNWMHKSMGIQLGLTDSLRCQLPAGTDGTGYWELTVYSMGYEDYT 142 
1_pfamImport   66 GGLGSAMQAVEWTYYGD-DASYTTPVRTFGTKFAADNWMHKSNGIQLGLTDSLRCQLPEGTDGTGYWKLTVYGLGYADYS 144 
WP_012738613  267 GALGAMMQAVKWTYYGN-DATRTNAVATYGTKFAADNWMHKSMGIQLGLTDSARCQLPAGYDGTGYWSLTVYALGYTDTT 345  Lachnospira e...
CDD73626      368 YDVEVTKDGISENV 381 
CDE53632      463 IPVNVAESDIHMAH 476 
CCZ64177      891 VEVNVTADDIHiat 904 
CDA62639      372 FEVQATSENIVSDN 385 
CDE44202      365 TTINVTDANIVKDS 378 
2_pfamImport  143 YKFQATEENIVKPE 156 
1_pfamImport  145 YSFKIGTENLAAPK 158 
WP_012738613  346 IDFEATDANIVKIK 359  Lachnospira eligens
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