4FMR


Conserved Protein Domain Family
HU-DNA_bdg

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pfam14848: HU-DNA_bdg (This model is not part of the current CDD release)
DNA-binding domain
Statistics
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PSSM-Id: 521492
Aligned: 12 rows
Threshold Bit Score: 131.694
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4FMR_A         5 VLKAWLVDNTvTTDDKTDKIFQLETTRSIDKEIILDRXVAK-NPGVRRETXALGIELXEEVVAEALXNGESVNTGLFRGV 83  Phocaeicola vul...
WP_013701076   1 MLKISLRENK-TANAKSPYHFYSENSGVLTFDELIDEMAKN-NTTITKADIAGAMNVYKEVVIRYVQLGYKVYCPFGQVY 78  Treponema succi...
Q73KF9         1 MLKYCLRENLlT-PDENDYMAQTADVRSFSLDEIIDLMMQK-GSTLTKADTKAALQVYGEVVSALIKDGAAVNTPLMNTS 78  Treponema denti...
Q73Q73         1 MLKYCLRENLlT-PAPDDYMAQVTDSQVFTLEDVIDRMVKR-GTTVTRTDLVAIMQLYTQECSFIVEEGGTLNTPLINTS 78  Treponema denti...
WP_013702138   6 VWSIVLRPNPfTQDNDRDQLADVVPAAAKRDEDIADAIVAE-GSEIKKETILNILSLRNKKVFEYALSGCTYSNEVGSLS 84  Treponema
WP_011966641  14 fRKLSLRVSKsHLPGNASYKGSVVWQRTLSIDDIAARVVDK-RSEYRKETLITTFNLLKREIYDAIEEGYNVDFGFGRTE 92  Parabacteroides...
WP_011967170   7 ILTVDLYDNVlT-EKTGDFTGKIRITGTTRTSDISNRIVKK-RTEYRPETITNILDLSYDEMIEALAQGRCVVNKFGQWL 84  Parabacteroides...
WP_013445411   4 ILKILLTKNEnY-KYSNVYNTEVLDNRNITITDIVDEMQKE-GLDVDRETALRIISQFNRKVTQEVFTGKNVNTGLVNIS 81  Paludibacter pr...
1_pfamImport   1 TLKAWLRPNLlTKDDPNDFVAVPLLGGSLGITEIIDALKKE-GMEIKTETAVDIITRFNRKASELVLNGYSVNTGLVYMR 79 
WP_011965494   5 VLKAWLVDNTvTTDDKTDKIFQLETTRSIDKEIILDRMVAK-NPGVRRETMALGIELMEEVVAEALMNGESVNTGLFRGV 83  Bacteroidaceae
WP_011966450   4 VLKGWLIDNAvTTDNKTDKILLLASAGSLTLDDVLEEMYKQ-DTGLRPETMRHSVTLYHRIVMDLILNGYSVNTGLFRAV 82  Parabacteroides...
WP_013634377   6 KIKAYLYDNLlTKDKPSDFIARTASERSLNVKQICEEAAGRgGADVSAAAMEHATELFLKEMAYQLCDGFSVNTGYFTAS 85  Pseudopedobacte...
4FMR_A        84 AQFRGVA--KQNAWDA----ATNSIYVSLTQGKAL-REAIKDTRVDV 123 Phocaeicola vulgatus ATCC 8482
WP_013701076  79 ICAKGTAndKLASFEPhlsgNDHDLNLKLTVDSSVaKTVLANTKTER 125 Treponema succinifaciens
Q73KF9        79 LSISGVFigATDSFDK----KRHSVNLNLTAGPVL-KEALSKIKCEK 120 Treponema denticola
Q73Q73        79 MSISGVFdgADDAFDK----KRHTVNLNINAGTAL-KTAVGKVKTIK 120 Treponema denticola
WP_013702138  85 PRVSGVFedINSVFDT----ALHKCSFDIMPSASL-RAETSKISVKV 126 Treponema
WP_011966641  93 LTVNGPFesLYEKFDP----NRHTLAPRLRPAPEL-KQRVANLRAVN 134 Parabacteroides distasonis
WP_011967170  85 LTINGSFdgKKSDFRS----TENKITVMFTPSATL-LKALENIYVNA 126 Parabacteroides distasonis
WP_013445411  82 PTVKGSLn--EKRWNP----RANRIEIGLKIGEEL-TNALSETVLEL 121 Paludibacter propionicigenes
1_pfamImport  80 PAIKGVFy--DKTWDK----EKHSVYVNVNQGTDL-RKAANDTKIEI 119
WP_011965494  84 AQFRGVAk--QNAWDA----ATNSIYVSLTQGKAL-REAIKDTRVDV 123 Bacteroidaceae
WP_011966450  83 PQLKGVVe--GGAWNK----ENNSIYVSFTQDKAL-REAIAKTVVEI 122 Parabacteroides distasonis
WP_013634377  86 VTIKGVFdsPTENFNP----RKQNLIFRFAQGDRL-RAEIKNIEVNI 127 Pseudopedobacter saltans
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