Conserved Protein Domain Family
DNA_pol_B_palm

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pfam14792: DNA_pol_B_palm (This model is not part of the current CDD release)
DNA polymerase beta palm
The catalytic region of DNA polymerase beta is split into three domains. An N-terminal fingers domain, a central palm domain and a C-terminal thumb domain. This entry represents the palm domain.
Statistics
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PSSM-Id: 521449
Aligned: 31 rows
Threshold Bit Score: 117.686
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q4QI79       354 RIPHEEGRLHEAFMKlRMRKYLGKD-YELVVCGSYRRQVESAGDIDVLITHRRSAAEggg----gssSS--Sggrpllpp 426 Leishmania major
XP_002503211 525 RIPRDEVEALAGHVE-DAVAAVCPG-CSVTVAGSYRRGKTSCGDVDVLLCPSEEFIRggsqgapgatVDtvE-------- 594
XP_001419864 149 RIPREEVSHIATAVR-EAANTFMKDeVRCYCVGSFRRGKADSGDVDVLVECRDVSLA----------NDllM-------- 209
XP_024465040 345 RIPRHEVQEMELLLQ-KTGEEILPG-VDILCGGSYRRGKASCGDLDIVITHPDGKSh--------------K-------- 400
XP_002982398 389 RIPRDEVVDTEKFVR-GVVETLAPG-AWVNAAGSYRRGKPTCGDVDILITHPDGSSh--------------Q-------- 444
EFJ32588     125 RIPRDEVADTEKFVR-GVVETLAPG-AWVNAAGSYRRGKPTCGDVDILITHPDGSRF----------TSlrC-------- 184
EDO35929     213 RMPREEAGKIGEVVK-AATEIIDPS-LLCITCGSYRRGKSTCGDVDVLVSHPDGKSh--------------H-------- 268
EEC19213     277 KMPREEAGEIADTVA-KAALSLQPG-LTVVPCGSYRRGKSMCGDVDVLISHAELSAl--------------D-------- 332
Q5KBS5       504 RIPREECKQIYELIK-LEAKTVDEK-LWVEIMGSYRRGSETSGDVDILITRDDADG------------KshK-------- 561 Cryptococcus ne...
CBJ33393     183 RMPRSEAAEIEAVVT-KVAQSICPG-VICQACGSYRRGKSHCGDVDVLIRPPEGQED--------------S-------- 238
Q4QI79       427 sKVLGAFLAGLKA--DKYIEATLA----------QG---PTKFMGLCRLRATvtesvsaatgkgkaakangkaP-TKFRA 490 Leishmania major
XP_002503211 595 -DILPAVLARLRT--RGVVTDDLS----------TG---TVSWMGVARLPDSrerlaptttd-gaegdgavavVtPKRLH 657
XP_001419864 210 -HILNDLRAGSPSprSGILTDDLQ----------VG---DVQYMGVAALQQPlr-----------------adDqAPPVH 258
XP_024465040 401 -GFLTRYVKRLKD--MKFLREDLIfsthseegtdSG---VDTYFGLCTYPGr-------------------------ELR 449
XP_002982398 445 -DLLARLVQELRR--IEFIVDGLRvdana-rkggTQ---PDMFMGIFHFQC----------------------K----AY 491
EFJ32588     185 -CTHSSHLHLLCS--HQDLLARLGg---------TQ---PDMFMGIFHFQG----------------------K----PY 223
EDO35929     269 -GVMGPLLCELKS--SGFLTDDLVsa-------dIEd--QKKYMGVCKLPG----------------------E--DTKH 312
EEC19213     333 -GLLNRLLQLLRS--SGFLTDGLAv--------pHGtgvPSKYMGVCRIDR----------------------Pg--SKH 377
Q5KBS5       562 -GAIKKLVDKLKA--KGVITHELSap------hdWNa-lEAKWMGVGRVGQ----------------------S---AMY 606 Cryptococcus ne...
CBJ33393     239 -PMFDDLIKRLVE--TGFITDKLTlag-----gpHRpgkSQSFMGICKLPG----------------------T--GRLH 286
Q4QI79       491 RRLDVRYVD 499 Leishmania major
XP_002503211 658 RRMDIKTYT 666
XP_001419864 259 RRIDIKVYE 267
XP_024465040 450 HRIDFKVYP 458
XP_002982398 492 RRIDIKVYP 500
EFJ32588     224 RRIDIKVYP 232
EDO35929     313 RRLDIIVVP 321
EEC19213     378 RRLDVFVIP 386
Q5KBS5       607 RRIDILCVP 615 Cryptococcus neoformans
CBJ33393     287 RRVDIKFYP 295
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