Conserved Protein Domain Family
Ribonucleas_3_3

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pfam14622: Ribonucleas_3_3 (This model is not part of the current CDD release)
Ribonuclease-III-like
Members of this family are involved in rDNA transcription and rRNA processing. They probably also cleave a stem-loop structure at the 3' end of U2 snRNA to ensure formation of the correct U2 3' end; they are involved in polyadenylation-independent transcription termination. Some members may be mitochondrial ribosomal protein subunit L15, others may be 60S ribosomal protein L3.
Statistics
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PSSM-Id: 494408
Aligned: 36 rows
Threshold Bit Score: 125.389
Created: 22-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q7S1R6       117 SEETKWLAVTHKSF----DY-----GRR--G--YNTRLAFLGRQI---IA--LettrSiltspVLNE-P-IVDkygrtpy 176 Neurospora cras...
A6KZ76        33 dISIYEQALLHKSLsvksEK-----GRL--L--NNERLEFLGDAI---LD--A----V-----VADI-V-YKR------- 80  Phocaeicola vul...
XP_001525590 106 DDV-ALQIITHKSF----GN-----GMK--P--YNIKLSVMGSKL---LK--L----Y-----TAKY-V-IHQ------- 148
Q2GMI6       267 PDEIKWLAITHKSF----DQ-----GRR--G--FNTRLAYFANARdppTQ--D----S-----FGRE-P-FQD------- 313 Chaetomium glob...
XP_002172714  67 sDELNLQLLTHKSF----NH-----GQT--P--YNEGFRAIGRHA---LE--L----S-----LINF-S-LQQ------- 110
XP_001730263 115 EETLVSHALTHESW----MH-----GMQ--G--HNRRLAFIGRRA---LKtyL----S-----LFFF-DiLEH------- 161
XP_011390421 113 NPDLALRAVTHESY----LN-----ARE--G--HNRRFAFLGRRT---LK--L----Ltt--lYLHA-R-LQS------- 159
WP_013006915  17 NKSLLLEALTHSSYa--yEK-----KLK--R--NYERLEFLGDSV---LQ--L----I-----VTEY-LvIKY------- 63  Deferribacter d...
Q6F1N5        16 DSKIFSTALTHNSY----AN-----ETKtkE--TYQRLEFLGDAV---LQ--M----Y-----VSKFlY-LNF------- 62  Mesoplasma flor...
A8F397        22 EPELLYNALCHSSY----AHeqkqrGRK--DveSNERLEFLGDAV---ID--L----L-----LAEYlY-LEF------- 73  Pseudothermotog...
Q7S1R6       177 nhaalANI--D--KL-I---------YTQPL-D---IMD-KT-----KI-ARMGIDFG----------LLTVMRWk--pR 219 Neurospora cras...
A6KZ76        81 -----FEGk-R--EG-F---------LTNTRsK---IVQ-RE-----TL-NRLAIEIG----------LDKLIKY----- 117 Phocaeicola vul...
XP_001525590 149 -----QSTtpD--KIkI---------EGKDLtKlgsLYS-KElsgrdAA-GYFAKVEN----------LNKTMFWv--sR 198
Q2GMI6       314 -----PAL--AnvDK-L---------NVKQPmD---VVS-KD-----KL-AKLAIDVG----------LPEVTRWk--pR 354 Chaetomium glob...
XP_002172714 111 -----TNQ--L--KG-V---------SEMWLqN---ACR-PE-----NI-NKVAEQWG----------LQQVIRWktpkL 151
XP_001730263 162 -----ARRtnS--SV-S---------DVEYLqN---LLSsQQ-----HV-DDIASTHHlgivsaanlcLEKVMRWhstvR 215
XP_011390421 160 -----TTK--G--DA-AhnyisrlleSPTGVdS---ILT-TH-----RLgDKIGRELG----------LENVMRWtpavS 210
WP_013006915  64 -----KEF--K--EG-V---------LSKYRsF---FVS-ED-----II-SEIALKIR----------LNDFLMLg---- 100 Deferribacter d...
Q6F1N5        63 -----TNA--P--EG-K---------LTKTRsD---IVR-QE-----TL-SEIAKMID----------LGKIIRLg---- 99  Mesoplasma flor...
A8F397        74 -----PEA--S--EG-V---------MAKVKaA---IAS-EE-----AL-AQIARDIN----------LGRYMFL----G 110 Pseudothermotog...
Q7S1R6       220 M-PED-LESSGVVV--VLNSTLFAIIGAISLEKGAAVAQRIVREKILKRL 265 Neurospora crassa OR74A
A6KZ76       118 ---TA-RQSSHNSY--MCGNAFEALVGAIYLDRGYRACKYFMEHRIIGpy 161 Phocaeicola vulgatus ATCC 8482
XP_001525590 199 DpTAS-FEASGELK--VSGQLVHSLIGAINFYHGKDVAEEFIGEKIMKGL 245
Q2GMI6       355 M-PEH-LEGSGLTA--VLNTSLFAIIGAISLQHGAEVAQQVVREKILRRL 400 Chaetomium globosum CBS 148.51
XP_002172714 152 RaSVD-TKQSGLER--VTFDTMLAIIGAVYMRKGARTAVDFCQKNLVPAl 198
XP_001730263 216 MdPVSgPQESGLFK--VRGSCVEGLIGAIYHYKGAQVAQQFFLSRILLPL 263
XP_011390421 211 DgQVG-PRETGLFK--VRGVAVEALVGAIYHQKGASEASKFFQRWILPSL 257
WP_013006915 101 --KGE-IVSGGYTKpsILADIFESLLGAVYLDGGYNEARRIVL-MLMSEL 146 Deferribacter desulfuricans
Q6F1N5       100 --QGE-IKSKGYEKpsILSDVYEAVTAAIYLDQTEEVLISWIKSTIFKYI 146 Mesoplasma florum L1
A8F397       111 R--GE-EVSSGRERdsLLADMLEAVVAAVYID-GGLTAVKKVFLSYFAKY 156 Pseudothermotoga lettingae TMO
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