6YWY


Conserved Protein Domain Family
Ribonucleas_3_3

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pfam14622: Ribonucleas_3_3 (This model is not part of the current CDD release)
Ribonuclease-III-like
Members of this family are involved in rDNA transcription and rRNA processing. They probably also cleave a stem-loop structure at the 3' end of U2 snRNA to ensure formation of the correct U2 3' end; they are involved in polyadenylation-independent transcription termination. Some members may be mitochondrial ribosomal protein subunit L15, others may be 60S ribosomal protein L3.
Statistics
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PSSM-Id: 521313
Aligned: 37 rows
Threshold Bit Score: 121.534
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6YWY_9       118 EETKWLAVTHKSF----DY-----GRR--G--YNTRLAFLGRQI---IA--LettrsiltspvlnepI---VDKYgrtP- 175 Neurospora crassa
A6KZ76        34 ISIYEQALLHKSLsvksEK-----GRL--L--NNERLEFLGDAI---LD--A---------------V---VADI---V- 77  Phocaeicola vul...
XP_001525590 107 DV-ALQIITHKSF----GN-----GMK--P--YNIKLSVMGSKL---LK--L---------------Y---TAKY---V- 145
XP_002493049  64 NELLLQILTHKSF----AH-----GLK--P--YNEKLSVIGFQL---LK--L---------------Q---SSVH---V- 103
Q2GMI6       268 DEIKWLAITHKSF----DQ-----GRR--G--FNTRLAYFANARdppTQ--D---------------S---FGRE---P- 310 Chaetomium glob...
XP_001730263 116 ETLVSHALTHESW----MH-----GMQ--G--HNRRLAFIGRRA---LKtyL---------------S---LFFF---Di 158
XP_011390421 114 PDLALRAVTHESY----LN-----ARE--G--HNRRFAFLGRRT---LK--L---------------LttlYLHA---R- 156
WP_013006915  18 KSLLLEALTHSSYa--yEK-----KLK--R--NYERLEFLGDSV---LQ--L---------------I---VTEY---Lv 60  Deferribacter d...
Q6F1N5        17 SKIFSTALTHNSY----AN-----ETKtkE--TYQRLEFLGDAV---LQ--M---------------Y---VSKFl--Y- 59  Mesoplasma flor...
A8F397        23 PELLYNALCHSSY----AHeqkqrGRK--DveSNERLEFLGDAV---ID--L---------------L---LAEYl--Y- 70  Pseudothermotog...
6YWY_9       176 YNH----------AalaNI--D--KL-I---------YTQPL-D---IMD-KT-----KI-ARMGIDFG----------L 210 Neurospora crassa
A6KZ76        78 YKR----------F---EGk-R--EG-F---------LTNTRsK---IVQ-RE-----TL-NRLAIEIG----------L 111 Phocaeicola vul...
XP_001525590 146 IHQ----------Q---STtpD--KIkI---------EGKDLtKlgsLYS-KElsgrdAA-GYFAKVEN----------L 189
XP_002493049 104 ISKpsdspyalngK---NF--D--CL-G---------SLLTK-S---IGN-HK-----SL-ARFAKEKQ----------F 145
Q2GMI6       311 FQD----------P---AL--AnvDK-L---------NVKQPmD---VVS-KD-----KL-AKLAIDVG----------L 345 Chaetomium glob...
XP_001730263 159 LEH----------A---RRtnS--SV-S---------DVEYLqN---LLSsQQ-----HV-DDIASTHHlgivsaanlcL 204
XP_011390421 157 LQS----------T---TK--G--DA-AhnyisrlleSPTGVdS---ILT-TH-----RLgDKIGRELG----------L 199
WP_013006915  61 IKY----------K---EF--K--EG-V---------LSKYRsF---FVS-ED-----II-SEIALKIR----------L 93  Deferribacter d...
Q6F1N5        60 LNF----------T---NA--P--EG-K---------LTKTRsD---IVR-QE-----TL-SEIAKMID----------L 92  Mesoplasma flor...
A8F397        71 LEF----------P---EA--S--EG-V---------MAKVKaA---IAS-EE-----AL-AQIARDIN----------L 103 Pseudothermotog...
6YWY_9       211 LTVMRWk---PRmPED-LESSGVVV--VLNSTLFAIIGAISLEKGAAVAQRIVREKILKRL 265 Neurospora crassa
A6KZ76       112 DKLIKY--------TA-RQSSHNSY--MCGNAFEALVGAIYLDRGYRACKYFMEHRIIGpy 161 Phocaeicola vulgatus ATCC 8482
XP_001525590 190 NKTMFWv--sRDpTAS-FEASGELK--VSGQLVHSLIGAVNFYHGKDVAEEFIGEKIMKGL 245
XP_002493049 146 DQLVFWkk-rDPtLED-PATSGEDT--VLGKTVLALIGAINLTHGKKVATEFIETELMPll 202
Q2GMI6       346 PEVTRWk--pRM-PEH-LEGSGLTA--VLNTSLFAIIGAISLQHGAEVAQQVVREKILRRL 400 Chaetomium globosum CBS 148.51
XP_001730263 205 EKVMRWhstvRMdPVSgPQESGLFK--VRGSCVEGLIGAIYHYKGAQVAQQFFLSRILLPL 263
XP_011390421 200 ENVMRWtpavSDgQVG-PRETGLFK--VRGVAVEALVGAIYHQKGASEASKFFQRWILPSL 257
WP_013006915  94 NDFLMLg------KGE-IVSGGYTKpsILADIFESLLGAVYLDGGYNEARRIVL-MLMSEL 146 Deferribacter desulfuricans
Q6F1N5        93 GKIIRLg------QGE-IKSKGYEKpsILSDVYEAVTAAIYLDQTEEVLISWIKSTIFKYI 146 Mesoplasma florum L1
A8F397       104 GRYMFL----GR--GE-EVSSGRERdsLLADMLEAVVAAVYID-GGLTAVKKVFLSYFAKY 156 Pseudothermotoga lettingae TMO
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