Conserved Protein Domain Family
RFX5_DNA_bdg

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pfam14621: RFX5_DNA_bdg (This model is not part of the current CDD release)
RFX5 DNA-binding domain
RFX5 and RFXAP reveals molecular details associated with MHCII gene expression.
Statistics
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PSSM-Id: 521312
Aligned: 9 rows
Threshold Bit Score: 270.234
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_007485481 389 PIPGRAPPEGLIQSQSLEkNREIGPGVDMGPRGKGVKRTAEVPIGDPRGQELAAKVLGQDTEEIGIDAKRKRGRPRKKSN 468
NP_001101164 462 LGPGRVPPRAPILPRGTE-SREVGISGDPRPHDKGVKRTAEVPLSEASGQDPPVKEMKHETEDTVSEAKRKRGRPRKKTG 540
XP_023375160 394 HGPGRAPPGGLTQPQGTE-NREVGIGGDPGPYQKGVKRTAEVPMGEASGQDPPAKATKQDIEDTASDTKRKRGRPRKKSG 472
ELV10740     246 HKKSERP----SQLRGTE-NRELSIGGDLTPHDKGIKRTAEVPVIEASGQDPPAKAAKPDTEDTASDAKRKRGRPRKKSG 320
XP_004854050 412 PGPGRAPPGGLTQPQGPE-NREVGIGADPGSHDKGAKRTAEVPVSEASGQDPPAKAAKQDTEDPASDAKRKRGRPRKKSG 490
XP_006919836 395 PGPGQAPLAGL---QGPE-GRELGVGGGPRPQDRGVKRTAEVPGSEANGQDPAAKAAKQEVEGTGSDAKRKRGRPRKKSG 470
1_pfamImport   1 PGPGQALPGVLAQPRVTE-NRELGIGGDPGPHDKGVKRTAEVPVCEAIGKDPLAKAAKQDIEDTGSDAKRKRGRPRKKLG 79 
XP_004776774 397 PGPGQALPGALAQPQGPE-NREAGIGGDPGPHDKGVKRTAEVPVSEAIRQDPPAKAAKLDREDTGSDAKRKRGRPRKKSG 475
XP_024304559 225 PGPGRAPPGGLTQPRGTE-NREVGIGGDQGPHDKGVKRTAEVPVSEASGQAPPAKAAKQDIEDTASDAKRKRGRPRKKSG 303 human
XP_007485481 469 GEGEQSSSPEKPLPATDAAHSPRVTPESWGFGRESDPARGLEKP-------RSVPIKLEKEEDTDFKRGKEPSVQHAKEI 541
NP_001101164 541 GSGERNATPEKSAAAVNSPRSPRLLWETWGSKRENNLVGRPERPgavgeaqRETVLAQGQEDGAVSKGEKSLSSQEAKEA 620
XP_023375160 473 GSGEMNSTPEKSAAAMESGQSSRLPGELWGCGRENSLVGGPKRPvge--aeKGPVLTQDQEDGAVSKGGRDPRSRHAKEA 550
ELV10740     321 GNGERNSASEKSAAATDSTQSSRLPWETWGSAEKSSSAGGAETPgplgeteKGAVLAQGREDGVVSKGGKGPSSRHAKEA 400
XP_004854050 491 GSGERNSTPEKSAAAMDSAQSSRLPWETWGPRGESNSAGGVERPgpnreaeQRVVLPGGQEDGAVSKGGRVPSSRQAKEA 570
XP_006919836 471 GSRESNSTPDKAAAAVDSAQASRFPRETWASEAGSAPAGGSQSSgpggeaeRGTALAQGQEDGAVSRGGRGPSSRYAKGG 550
1_pfamImport  80 GSRERNSPPDKSAAAMDSAPSSRLPRETWASGVGSSSAGRSGRPgplgqaeKGMVLVQGQEDGTVSKGGRGPSAQHAKEA 159
XP_004776774 476 GSKERNSPPDKS-AAMDSAQSPRLPQETWASGGESNSTGGSGRPgpvgeaeKGMVLAQGQEEGAVARGGRGPSSRHAKEA 554
XP_024304559 304 GSGERNSTPLKSAAAMESAQSSRLPWETWGSGGEGNSAGGAERPgpmgeaeKGAVLAQGQGDGTVSKGGRGPGSQHTKEA 383 human
XP_007485481 542 GDISP-VTPKVSVIKGnKSWEEPPQSMGREaaAQTTGQGNKDPKGNMPQGSLFFGHKDPKAT 602
NP_001101164 621 EDKIPpVTSKVSVIKG-RIQKEALQLVKGE--ADAATQGNKGLKGRVLQSSLTHEHKDPKAT 679
XP_023375160 551 EDKIPlVPSKVSVIKGsRSQKEALQLVKEE--VGPTVQGDKDLKGHMLQSS--HERKDPKAT 608
ELV10740     401 EDKIPlVTPKVSVIKGcRSQKEALQLVKGE--LDTAAQGNKDLKEHVLQSSSSHEHKDPKAT 460
XP_004854050 571 EDKIPlIAPKVSVIKGsRSQKGGLQVVKGG--AHTAAQGNKGLKGHVLPSSLTPECKDPKTT 630
XP_006919836 551 EDTTLlSPLKVSVIKGsRSHKEAALSVEGE--VDSAAQGNKDSKGHVPQSSSSQERRDPRAT 610
1_pfamImport 160 EDKMPvVTSKVSVIKGsRSQ-ESLHLVKEE--VDTAAQGNKDLKGYVLPSSLFHVGKDPKAA 218
XP_004776774 555 EDKIPlVTSKVSVIKGsRSQKEALHLVKGE--VDTETQGNNDLKGHRLQNSLFHEGKDPKAT 614
XP_024304559 384 EDKIPlVPSKVSVIKGsRSQKEAFPLAKGE--VDTAPQGNKDLKEHVLQSSLSQEHKDPKAT 443 human
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