1DBG,7O78


Conserved Protein Domain Family
Chondroitinas_B

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pfam14592: Chondroitinas_B (This model is not part of the current CDD release)
Chondroitinase B
This family includes chondroitinases. These enzymes cleave the glycosaminoglycan dermatan sulfate.
Statistics
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PSSM-Id: 521298
Aligned: 8 rows
Threshold Bit Score: 547.875
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1DBG_A        28 VASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDG- 106 Pedobacter hepa...
WP_013188043  32 VTNTKELTQAIKDCVAGDEIVLKNGVWNNVQIDFYGEGTEQKPIILRAETAGKVSIEGESFINLGGSYLEVRDLYFKNGh 111 Croceibacter at...
WP_038528726  30 VNNAKELDQAIKAAKPGDHLVMANGVWTDIIIKFKGVGTEAQPIVLEAETPGKVFIEGQSRLRLSGEYLEVSGLYFRNGf 109 Formosa agariphila
WP_015481700  26 VSSNSELEEALSNAKKGDNIVLKNGTYKDVNIKFIGEGTENEPITLSAETAGEVFIEGESSLELSGNYLQVSGLFFRNGh 105 Polaribacter sp...
WP_303402514  29 VKNSTELNEAIDQANPGDEIIMANGDWNDVQIRFLGYGKEGQPITLKAETPGKVFIGGKSDLKLGGEYLVVNGLYFINGa 108 Zobellia galact...
Q46079        28 VASNETLYQVVKEVKPGGLVQIADGTYKDVQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELRGEHLILEGIWFKDG- 106 Pedobacter hepa...
WP_013634816  26 VASVKEVYSKVDQLKAGDTLLLKDGIYKDIQLVVKRSGSKEKPIVIAAQNGGKVFFTGDAKVELRGEYLVLKDIYFKDG- 104 Pseudopedobacte...
7O78_A         6 VASVKEVYSKVDQLKAGDTLLLKDGIYKDIQLVVKRSGSKEKPIVIAAQNGGKVFFTGDAKVELRGEYLVLKDIYFKDG- 84  Pseudopedobacte...
1DBG_A       107 --NRAIQAWKSHGPGLvaiyGSYNRITACVFDCFDEANSAYITTSLTEDGKvpqHCRIDHCSFTDKITFDQVI------- 177 Pedobacter hepa...
WP_013188043 112 tpTKTLIRFKINDEKI----ANHCKFINNAIVEFTQPDRDDTDHWIELWGR---HNSVSNNYISGKSNFGPTVmvmlkgn 184 Croceibacter at...
WP_038528726 110 tpKSTIIDFRTDNESV----ANHSKITNCVIEGFTQPDREEKDNWVQFYGR---HNELSNCYIAGKSNPGPTLriylngn 182 Formosa agariphila
WP_015481700 106 spKKNVIAFRTSPKDV----ANHSSVTNCVILDFNNLERDQDNLWVQFYGK---HNELSNCYLAGKTNGGPTVrvdlkgn 178 Polaribacter sp...
WP_303402514 109 spSNAVIEFAINEDTV----ANHSRITNSVILDFNKAQRNETDLWVLFKGR---HNQLDHCYIAGKSNRGPTVridlagn 181 Zobellia galact...
Q46079       107 --NRAIQAWKSHGPGLvaiyGSYNRITACVFDCFDEANSAYITTSLTEDGKvpqHCRIDHCSFTDKITFDQVI------- 177 Pedobacter hepa...
WP_013634816 105 --NRNVNQWKSHGPGLvaiyGSYNRVTGCVFNAFDEANSAYITTSLTEEGKvpkHCRIDHCVFTDKITFDQVI------- 175 Pseudopedobacte...
7O78_A        85 --NRNVNQWKSHGPGLvaiyGSYNRVTGCVFNAFDEANSAYITTSLTEEGKvpkHCRIDHCVFTDKITFDQVI------- 155 Pseudopedobacte...
1DBG_A       178 -NLNNtaraikdgsvggpgmYHRVDHCFF-SNPQKPGNAGGGIRIG--YYRNDIGRCLVDSNLFMRQDSEAEIITSKSQE 253 Pedobacter hepa...
WP_013188043 185 qHIKN---------------YHQIVNNHFgPRPRKGGPHGETMQIGdsGTSMTPSHTNVANNLFERCNGEVEIISSKSNN 249 Croceibacter at...
WP_038528726 183 eNINN---------------HHKIINNYFgERPRAGGPHGETIQLGdsYTSMTPSYTQVSNNLFERCNGEVEIISSKSNF 247 Formosa agariphila
WP_015481700 179 qSIRN---------------YHKIVNNHFgPRPRKGGARGETIQLGssFTSMSPSNTTIANNLFEECNGEVEIISSKTNF 243 Polaribacter sp...
WP_303402514 182 qNIKN---------------YHKINNNYFgPRPPKGGPSAETIQLGnsYTSMTPSHTLVAHNFFDRCNGEVEVISSKSNF 246 Zobellia galact...
Q46079       178 -NLNNtaraikdgsvggpamYHRVDHCFF-SNPQKPGNAGGGIRIG--YYRNDIGRCLVDSNLFMRQDSEAEIITSKSQE 253 Pedobacter hepa...
WP_013634816 176 -NLNNrpradkeskvlgeamYHRIDHCFF-SNPPKPGNAGGGIRVG--YYRNDIGRCLIDSNLFVRQDSEAEIVTSKSQE 251 Pseudopedobacte...
7O78_A       156 -NLNNrpradkeskvlgeamYHRIDHCFF-SNPPKPGNAGGGIRVG--YYRNDIGRCLIDSNLFVRQDSEAEIVTSKSQE 231 Pseudopedobacte...
1DBG_A       254 NVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLN-PGAMAS 332 Pedobacter hepa...
WP_013188043 250 NVFENNVFFESEGSLVLRHGNYATINRNIFIGNDNSPFIGGIRVINTGHWITNNYFYKLKGETFRAPLAVMNGiPKSPLN 329 Croceibacter at...
WP_038528726 248 NEFTNNIFFESEGSLVLRHGNYAKVDGNVFIGNENSTAIGGVRVVNTGHWVTNNYFYKIIGSDFRSAIAVMNGiPKSPLN 327 Formosa agariphila
WP_015481700 244 NIIKNNVFYKSEGSVVTRHGNYVSVDGNYFIGDGVNENYGGIRIINTGHWVTNNLFYKIKGKNFRSPIAIMNGiPKSPLN 323 Polaribacter sp...
WP_303402514 247 NEFRNNVFYKSEGSLVTRHGNYCIIDGNYFIGDTNSEQIGGVRLIGTGHWVTNNYFYNLKGKTFRSPLAVMNGiPKSPLN 326 Zobellia galact...
Q46079       254 NVYYGNTYLNCQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRHVIACNYFELSETIKSRGNAALYLN-PGAMAS 332 Pedobacter hepa...
WP_013634816 252 NVYYGNTILNCQGTLNFRHGDKQVALNNFFISTDNKYGYGGMFVWGSQHIIANNYFNLKKTIKARGNAALYLN-PGPEGS 330 Pseudopedobacte...
7O78_A       232 NVYYGNTILNCQGTLNFRHGDKQVALNNFFISTDNKYGYGGMFVWGSQHIIANNYFNLKKTIKARGNAALYLN-PGPEGS 310 Pseudopedobacte...
1DBG_A       333 EHALAFDMLIANNAFINVN-------GYAIHfnplderRKEYCAANRLKFETPHQLMLKGNLFFKd-KPYVYPFFKDDYf 404 Pedobacter hepa...
WP_013188043 330 RYNQVTDAVIAHNTFIKTEtpfhfsvGSNVS-------QSAVLPKSEIRSARPLRTTVANNFMYK--VSTSDLIKAYDTi 400 Croceibacter at...
WP_038528726 328 RYNQVTDVVIAYNSFIDCIsplqfsvGNNSD-------KSDVLPATELRSARPTRTIVANNLIYNhdVNETKPIFAYDEv 400 Formosa agariphila
WP_015481700 324 RYNQVTDVVVAYNTFVDSDspfqfgvGTNIA-------QADVLPKSEIRSARPLRTEVVNNVIYNa-EGDTTPIVEHDKa 395 Polaribacter sp...
WP_303402514 327 RYIQVTDVVVAHNTWVNCTsplqfgvGSNVD-------QKDILPASEIRSERPIRTIVANNLIYSd-KGDKQPVVAHDSl 398 Zobellia galact...
Q46079       333 EHALAFDMLIANNAFINVN-------GYAIHfnplderRKEYCAANRLKFETPHQLMLKGNLFFKd-KPYVYPFFKDDYf 404 Pedobacter hepa...
WP_013634816 331 EHALAFNSLIVNNFFDDNN-------GYDINfepllerRKEFAKEVNAEFKLPYNITIEGNLFASkqGDKHIPFLGNLD- 402 Pseudopedobacte...
7O78_A       311 EHALAFNSLIVNNFFDDNN-------GYDINfepllerRKEFAKEVNAEFKLPYNITIEGNLFASkqGDKHIPFLGNLD- 382 Pseudopedobacte...
1DBG_A       405 i--agKNSWTGNVALGV--EKGIPVN-----ISANRS-----AYK--P-------VK-IKDIqpIEGIALD 451 Pedobacter heparinus
WP_013188043 401 dgvnfKNNVVAIENQKVklPEGFLQSkv-svVKKGNF-----LYV--P-------TEtDRNI--FNGFDFE 454 Croceibacter atlanticus
WP_038528726 401 dgvsfYNNILNTNDVSGidTNGGLTQedftvNKVTDW-----FYT--P-------SKsFSDV--YNGFDFE 455 Formosa agariphila
WP_015481700 396 dgvtfKSNVIDNNGVAIanDKGLIVKdl-tlTDIGSN-----LAA--P-------VSgFKDVepYNGFDFE 451 Polaribacter sp. MED152
WP_303402514 399 dgirfRNNLINNQGLSFrkLPGVETKdf-slSELEEN-----VLI--P-------ANdLSGSalYKGFEFD 454 Zobellia galactanivorans
Q46079       405 i--agKNSWTGNVALGv--EKGIPVN----------IsanrsAYK--P-------VK-IKDIqpIEGIALD 451 Pedobacter heparinus DSM...
WP_013634816 403 -----KNNLQNNYSFGQmaNDKLFTNv----KPTTDGsynpqSYKgyQ-------LAnVKDIknIEGIDLD 457 Pseudopedobacter saltans
7O78_A       383 -----KNNLQNNYSFGQmaNDKLFTNv----KPTTDG-----SYN--PqsykgyqLAnVKDIknIEGIDLD 437 Pseudopedobacter saltans...
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