Conserved Protein Domain Family
Hydrophob_seed

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pfam14547: Hydrophob_seed (This model is not part of the current CDD release)
Hydrophobic seed protein
This domain has a four-helix bundle structure. It contains four disulfide bonds, of which three function to keep the C- and N-terminal parts of the molecule in place.
Statistics
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PSSM-Id: 521270
Aligned: 12 rows
Threshold Bit Score: 61.3082
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EFH46517     157 TCPIDALKLGACVDVLgGLIHIGLGKSyAKAKCCPLLEGLASVDAAVCLCTTIRAKLLN-IDLIIPI--ALELLVD-CGK 232
XP_002520567 239 TCPIDTLKLGACVDVLgGLIHIGIGSS-AKDACCPVLQGLVDLDAALCLCTTIKAKLLN-LNIIIPI--ALEVLVD-CGK 313
XP_002437917 237 TCPIDTLKLNACVDVLsGLIHLVIGQE-ARSKCCPLVQGIADLDAALCLCTTIRLRLLN-INIYLPI--ALNLLIT-CGK 311
EFH46081       7 TTIMS--DLGICVNVL-GLINLTTS---NVAQCCSILSGLNAPLVSVCACEALRLNILNlLGITINLnlRLNGLLGlC-R 79 
XP_002869821  36 VCPR---DIQACVNVL--RTSVILNAQ-TVSRCCTLVAGLDASVASVCICNAVRISLLNiLTITL----RLNQVLGiC-R 104
EFH46079      31 VCPRDSINFISCSNVF-RLSLILINKQ-TVLPCCTLVAGLDAAAASACICNAVRITIFNfLTINL----RVNQVLRlC-R 103
XP_002448630  45 sCPWDAVKFGACVGVL-GAAGLQAGAQ-LGSKCCDVVQGLAAAEAAACFCTTVKETVLG-IPTEWDV--GVGVLASaCKT 119
XP_002867767  36 TCPRNPLQLGVCANVL-GLANVTAGDP-RARQCCTAINGLADVQVADCLCFIFRP-----LPLVFAIdeAVREIFFaC-N 107
NP_001078427 577 TCPRNANQIRTCSNVL-RFFGNFLDFR-LAQPCCTLIRNLSDAEAAACLCDLVRARRSTlSP-------NIIILCRaCGR 647
NP_193978    296 iCSKNDTELKICAGIL-AISDGLLTTG-RAEPCCSIVRNVSDLDAVTCFCKSVGARRFSlSP-------NFGIFFKvCGR 366
EFH44025      85 RCPRNGLPLQICSTIL-SIFDGFLGFG-RAQPCCSLIRNLSDADALACLCESVRAPSGSlPP-------NIINLYRtCGR 155
NP_849949    207 TCPIDTLKLGACVDLLgGLVKIGLGDP-AVNKCCPLLKGLVEVEAAACLCTTLKLKALD-LNLYVPV--ALQLLLT-CGK 281 thale cress
EFH46517     233 TP-PRGFKCP 241
XP_002520567 314 NP-PPGFQCP 322
XP_002437917 312 HP-PSGFQCP 320
EFH46081      80 LPiQPGYNCL 89 
XP_002869821 105 ITpPAGFTCA 114
EFH46079     104 ILpPAGFRCA 113
XP_002448630 120 EL-PNGFKCl 128
XP_002867767 108 RVfPIGFQCP 117
NP_001078427 648 RI-PRGFTCP 656
NP_193978    367 RI-PQGFSCP 375
EFH44025     156 SI-PPGFTCP 164
NP_849949    282 NP-PPGYTCS 290 thale cress
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