1JYH,5XBI


Conserved Protein Domain Family
Cass2

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pfam14526: Cass2 (This model is not part of the current CDD release)
Integron-associated effector binding protein
This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.
Statistics
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PSSM-Id: 494337
Aligned: 23 rows
Threshold Bit Score: 84.348
Created: 22-Aug-2024
Updated: 4-Dec-2024
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1JYH_A         4 EIKQEEKRTVAGFHLVGPWEQTV-------KKGFEQLMMWVd---SKNI-V-P--KEWVAVYYDNPDetPAEKLRC-DTV 68  Escherichia coli
WP_012201057 168 RIVYLPPATVATYQYEGDEPEMHv------NQVIDQFVRDNd---LIHK-KtD--LRHFGFNSPCPVd-GTEYHGY-EMW 233 Lachnoclostridi...
WP_012862609 165 RIIYLPPFTAAASHYIGENPEENa------EKPLRDFIKKKr---LFDT-KpD--SRVFGFNHPSPSh-ENAYYGY-EFW 230 Sebaldella term...
WP_004238549 133 ELTELPEMLLAGSHHYHRKHLSDwqt--enRKFRREFWEKF----FKEVdIiP--ADLYAIHAPYES--TADDISYaYTT 202 Morganella
1_pfamImport   1 EIVTVDNINVAYIRHIGTYEELTiafpkmiEKLFQYATKQN----YH-V-FeD--TKVLTIYHDHHEftEDNHLRT-SLC 71 
WP_022546926 168 EIKEMPAFNVIYCRHTGQFNKI--------GEAYEKLMKWAgprgLLKFp--K--TKTLTVYHDDPAitAIDQVRQ-SAC 234 Bacteroidales b...
WP_015890912   5 TIVKLDEMRVAGLHIRTTNEAEGgpn-gkiGGLWQRYYQEEhpikTPHQ-KeP--GVVLGVYSDYDSd-ETGEYSL-LVG 78  Brevibacillus b...
WP_025352749   4 EIVERDETWVAGLPVRSPKRALGelrdrdlEAAWAAVLHQE----LG--------GPLACSYTDYAPd-PGTFNTQ-IVG 69  Nocardia nova
2_pfamImport   1 EVVELPQMTVRGLGCRTSNTAPDmse--kiGGLWKSFFGGV----FQSI-DkKasPYTYGVYSNYATd-FTGEYDM-TVG 71 
Q8Y9Z0         4 EIVELKKETFTGNKVEIPEFDPQkg----fGP-MSEIKEAA----YTKF-AkNe-KDYVGINASL------DGLQY-YIV 65  Listeria monocy...
1JYH_A        69 VTVPGYft-lPENSEGVILTEITGGQYAVAVARv--vGDdfa---kpWYQFFNSLLQDSAYE---------MLPKP---- 129 Escherichia coli
WP_012201057 234 ITVPDD----IVIPEPLTKKHFEGGLYAAYMIPf---GAfe-----eWGRLNEWVQNSSLYE---------YNGNWdsnn 292 Lachnoclostridi...
WP_012862609 231 VTIPDD----MEVERPLTKKKFDGGLYAVHTINm---GDfh-----eWEWLMKWVQESPHYLenyrdeadeC---Mggll 295 Sebaldella term...
WP_004238549 203 AVIPSVlsadSIRRASLSPVTLPGGHYLRITIDpamlKNlpadynniIHAAYSGTLAEMNLL---------RRRGP---- 269 Morganella
1_pfamImport  72 ITIPGEs---AIETNDIGIMVIPSGKYAVGHFE-----IfqdeykraWDFIYGEWLPNSGYK---------PRDSY---- 130
WP_022546926 235 ITVEND----VRTEGEIGKMKIDGGRYAVGRFE----IDvtgf-ekaWNTMCLWLTE-SGYQ---------PGEGY---- 291 Bacteroidales b...
WP_015890912  79 TVVEKN----GELPAEVTVKTLPASTYAVFTTRv---GPmvevvmeaWAKVWEWSHQ-PGNK---------RTFTG---- 137 Brevibacillus b...
WP_025352749  70 YECSSF----DQVTRGHIVSRLPAGTYARFSSV----GNfpqvmtdlWTQIAYAE-EHNQIK---------RTFTG---- 127 Nocardia nova
2_pfamImport  72 CQVTE-----DSVSDNTVTTVIPRGKYAKFTLH----GDaqkdiyafWCRL--WFM---PLD---------RAYTA---- 124
Q8Y9Z0        66 ASTNG--------ENGDTTFDIPEGKYAKFVTS----ETdrpaldgfIGASYGEVGQSDTVG---------IAGSF---- 120 Listeria monocy...
1JYH_A       130 ------------CFEVY-------LNNGAEd----------gYWD----IEMYVAV 152 Escherichia coli
WP_012201057 293 ---------mfgWLEEHlnyinhvMLENSEp----------eGLQ----LDLLIPI 325 Lachnoclostridium phytofermentans
WP_012862609 296 eealnfvyhvsnDIEKV-------KAEH----------------Q----LDLYYPI 324 Sebaldella termitidis
WP_004238549 270 ------------DIEHY-------KLLPAErhdefianglqyVEE----INYYIPV 302 Morganella
1_pfamImport 131 ------------PFEVY-------RNDPKQ------------HPKhkhiVDIYVPI 155
WP_022546926 292 ------------PYELY-------HNSPEDdk--------nqKFV----LDICIPV 316 Bacteroidales bacterium CF
WP_015890912 138 ------------DFERYdgvrcadP----N------------NAQ----VDLYIAI 161 Brevibacillus brevis
WP_025352749 128 ------------DFECY-------PHAY----------------K----IDLYLAV 144 Nocardia nova
2_pfamImport 125 ------------DFEEY-------VSEH----------------D----FNIYISI 141
Q8Y9Z0       121 ------------NLEDL-------REAE---------------------FTLYIPV 136 Listeria monocytogenes
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