5XQL,1JYH


Conserved Protein Domain Family
Cass2

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pfam14526: Cass2 (This model is not part of the current CDD release)
Integron-associated effector binding protein
This family contains Cass2 from Vibrio cholerae, an integron-associated protein that has been shown to bind cationic drug compounds with submicromolar affinity. Cass2 has been proposed to be representative of a larger family of independent effector-binding proteins associated with lateral gene transfer within Vibrio and other closely-related species.
Statistics
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PSSM-Id: 521256
Aligned: 25 rows
Threshold Bit Score: 81.2596
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5XQL_A       143 RIVERPAFSVVGMEYFGSAPGDT------IGQLWERFIPREh---EIAGKHD--PEVsYGICAQQP----NGEFHYVAGF 207 Pseudomonas aer...
WP_012862609 165 RIIYLPPFTAAASHYIGENPEEN------AEKPLRDFIKKKr---LFDTKPD--SRV-FGFNHPSPsh-eNAYYGYEFWV 231 Sebaldella term...
P33012         4 EIKQEEKRTVAGFHLVGPWEQTV-------KKGFEQLMMWVd---SKNIV-P--KEW-VAVYYDNPdetpAEKLRCDTVV 69  Escherichia col...
1_pfamImport   1 EIVTVDNINVAYIRHIGTYEELTiafpkmIEKLFQYATKQN----YH-VFED--TKV-LTIYHDHHefteDNHLRTSLCI 72 
AGY54871     168 EIKEMPAFNVIYCRHTGQFNKI--------GEAYEKLMKWAgprgLLKF-PK--TKT-LTVYHDDPaitaIDQVRQSACI 235
WP_015890912   5 TIVKLDEMRVAGLHIRTTNEAEGgpn-gkIGGLWQRYYQEEhpikTPHQKEP--GVV-LGVYSDYDsd-eTGEYSLLVGT 79  Brevibacillus b...
WP_025352749   4 EIVERDETWVAGLPVRSPKRALGelrdrdLEAAWAAVLHQE----LG-------GPL-ACSYTDYApd-pGTFNTQIVGY 70  Nocardia nova
4_pfamImport   1 EVVELPQMTVRGLGCRTSNTAPDms--ekIGGLWKSFFGGV----FQSIDKKasPYT-YGVYSNYAtd-fTGEYDMTVGC 72 
Q8Y9Z0         4 EIVELKKETFTGNKVEIPEFDPQk----gFGP-MSEIKEAA----YTKFAKNe-KDY-VGINASL------DGLQYYIVA 66  Listeria monocy...
WP_012201057 168 RIVYLPPATVATYQYEGDEPEMH------VNQVIDQFVRDNd---LIHKKTD--LRH-FGFNSPCPvd-gTEYHGYEMWI 234 Lachnoclostridi...
5XQL_A       208 EVQEG---WPVPEGMVRFQVPAQKYAVFTHK--GTAPQia-esFQAIYSHLLAERGLE---------PKAGV-------- 264 Pseudomonas aer...
WP_012862609 232 TIPDD---MEVERPLTKKKFDGGLYAVHTINm-GDFHE-----WEWLMKWVQESPHYLenyrdeadeC---Mgglleeal 299 Sebaldella term...
P33012        70 TVPGYftlPENSEGVILTEITGGQYAVAVARvvGDdfa---kpWYQFFNSLLQDSAYE---------MLPKP-------- 129 Escherichia col...
1_pfamImport  73 TIPGEs--AIETNDIGIMVIPSGKYAVGHFE---IFQDeykraWDFIYGEWLPNSGYK---------PRDSY-------- 130
AGY54871     236 TVEND---VRTEGEIGKMKIDGGRYAVGRFE--IDVTGfe-kaWNTMCLWLTE-SGYQ---------PGEGY-------- 291
WP_015890912  80 VVEKN---GELPAEVTVKTLPASTYAVFTTRv-GPMVEvvmeaWAKVWEWSHQ-PGNK---------RTFTG-------- 137 Brevibacillus b...
WP_025352749  71 ECSSF---DQVTRGHIVSRLPAGTYARFSSV--GNFPQvmtdlWTQIAYAE-EHNQIK---------RTFTG-------- 127 Nocardia nova
4_pfamImport  73 QVTE----DSVSDNTVTTVIPRGKYAKFTLH--GDAQKdiyafWCRL--WFM---PLD---------RAYTA-------- 124
Q8Y9Z0        67 STNG-------ENGDTTFDIPEGKYAKFVTS--ETDRPaldgfIGASYGEVGQSDTVG---------IAGSF-------- 120 Listeria monocy...
WP_012201057 235 TVPDD---IVIPEPLTKKHFEGGLYAAYMIPf-GAFEE-----WGRLNEWVQNSSLYE---------YNGNWdsnn---- 292 Lachnoclostridi...
5XQL_A       265 --------DFEYY-------DQRFrgplDP----NSQ----VDLYIPI 289 Pseudomonas aeruginosa
WP_012862609 300 nfvyhvsnDIEKV-------KAEH------------Q----LDLYYPI 324 Sebaldella termitidis
P33012       130 --------CFEVY-------LNNG----AEd--gYWD----IEMYVAV 152 Escherichia coli K-12
1_pfamImport 131 --------PFEVY-------RNDP----KQ----HPKhkhiVDIYVPI 155
AGY54871     292 --------PYELY-------HNSP----EDdknqKFV----LDICIPV 316
WP_015890912 138 --------DFERYdgvrcadP--------N----NAQ----VDLYIAI 161 Brevibacillus brevis
WP_025352749 128 --------DFECY-------PHAY------------K----IDLYLAV 144 Nocardia nova
4_pfamImport 125 --------DFEEY-------VSEH------------D----FNIYISI 141
Q8Y9Z0       121 --------NLEDL-------REAE-----------------FTLYIPV 136 Listeria monocytogenes
WP_012201057 293 -----mfgWLEEHlnyinhvMLEN----SEp--eGLQ----LDLLIPI 325 Lachnoclostridium phytofermentans
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