Conserved Protein Domain Family
HTH_40

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pfam14493: HTH_40 (This model is not part of the current CDD release)
Helix-turn-helix domain
This presumed domain is found at the C-terminus of a large number of helicase proteins.
Statistics
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PSSM-Id: 521230
Aligned: 207 rows
Threshold Bit Score: 53.3
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CBJ28290       43 AHEAYMR--QDSLTLEQVAARmpRPVAIGTFAGHLAACLEAGltfawdR-----RRLGIDlDLERKILDILDG----FK- 110
WP_013768391  616 TYKLSLEllKKGLSLEAIAEK--RGIETSTVLAHLAYLYETG------Eev-plFQFVSK-VEIQQILKARGY----LEn 681 Haliscomenobac...
WP_014084256  605 TYKITLEmfQAGESVAAIAAK--RELNPATIMSHLAKLYLDG------Nai-niHQFIDK-SEIELIKNAKEI----LEn 670 Flavobacterium...
WP_013186147  600 TYQQTLQlyTQGMPVEDISKE--RDLSLNTIYSHLLKLHLED------KlslnlNEFVTD-EELSKVKTASKT----LNh 666 Croceibacter a...
WP_013993407  605 SHQLSFQllKEGFSVEDIAKQ--RGIQESSIYTHLQKAHAEG------Apv-dlGQFISS-DEIKSIKKAQSE----LQd 670 Zobellia galac...
WP_014032290  597 TQGLSFSlfEKGMTVADIATQ--RELKEDTIYGHFLKVHEEG------Kpi-dlYQFISE-EEVNKIQVAKTE----LGd 662 Flagellimonas ...
12_pfamImport   1 TYAETLMllMQNYSIEEIASA--RDLKPVTVYSHIAWLIKEK------Kft-ewHRFLTV-YEIEAVAGALKNv---NY- 66 
Q6FAS6        466 TLDETRAlfEEGYEIQDIAVE--RGLTPATIINHLARLQKEqgl------------diSVaHPGEEVVEQIRKlykrVQk 531 Acinetobacter ...
WP_013620454  463 TYDVTLDyfRKKLSIEEIADQ--RGLSSGTIAGHLIKLCKDyp----------eEDF-SFyQPKEQIIKDVEK------- 522 Cellulophaga l...
WP_013598707  463 TILITLDlvNEGLSIDEIADK--RGLTSSSIVDHLTKLKETGaef-------dlKRF----RPEQSIIEKVRYayseIEf 529 Weeksella virosa
CBJ28290      111 --QEGhdplasgfrLKPIFERLppgtESKTAYSMIRLVL 147
WP_013768391  682 --PSS---------LKTLYDYF----DGKMSYDKIKLAM 705 Haliscomenobacter hydrossis
WP_014084256  671 --PAQ---------LKTYFDYF----EEKIPYEKIRIGL 694 Flavobacterium branchiophilum
WP_013186147  667 --PEG---------LKPYYLHF----EETIPYWKLKFAL 690 Croceibacter atlanticus
WP_013993407  671 --AEG---------LKVFFEYF----EGKLPYWKIQMGL 694 Zobellia galactanivorans
WP_014032290  663 -qVEG---------LKPYFMYF----EEQIPYWKIRMAL 687 Flagellimonas ruestringensis
12_pfamImport  67 --TGE---------LKPIYEAL----NEEIDYGKIRLAI 90 
Q6FAS6        532 skrpenfnddgsikLKPIVELT----SPRMGYDQVRLAL 566 Acinetobacter baylyi
WP_013620454  523 --AKSkqkkgepvsLKAIFEAL----NKKVDYNDIKQAL 555 Cellulophaga lytica
WP_013598707  530 eeNKI---------LKPIYDYL----QGELTYEDIKKAL 555 Weeksella virosa
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