Conserved Protein Domain Family
DNA_pol3_a_NI

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pfam14480: DNA_pol3_a_NI (This model is not part of the current CDD release)
DNA polymerase III polC-type N-terminus I
This is the first N-terminal domain, NI domain, of the DNA polymerase III polC subunit A that is found only in Firmicutes. DNA polymerase polC-type III enzyme functions as the 'replicase' in low G + C Gram-positive bacteria. Purine asymmetry is a characteristic of organisms with a heterodimeric DNA polymerase III alpha-subunit constituted by polC which probably plays a direct role in the maintenance of strand-biased gene distribution; since, among prokaryotic genomes, the distribution of genes on the leading and lagging strands of the replication fork is known to be biased. It has been predicted that the N-terminus of polC folds into two globular domains, NI and NII. A predicted patch of elecrostatic potential at the surface of this domain suggests a possible involvement in nucleic acid binding. This domain is associated with DNA_pol3_alpha pfam07733 and DNA_pol3_a_NI pfam11490.
Statistics
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PSSM-Id: 521222
Aligned: 93 rows
Threshold Bit Score: 33.3052
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012634896     6 NINRFLYDLFPDamdfDGEFSALKQLKVERMSVFIKANRLEIHTISSDIVSIALIMKAEECLKQKLGAPNlTLKVKC 82   Ruminiclostridi...
12_pfamImport    1 LLQETFADLRLT----ARQQSVFEEVYVERLCLLREQKRVEVHIVSEHIIPYREIALLEYAL-NQLFDKA-GFTVQV 71  
11_pfamImport    1 KFFHVFPTLRAD----DDVRLLFSDVEVKKITTNSRRDFLNIYIFSRHLIQKKQIFQMEQCIKDQLFAKT-AVAVHI 72  
5_pfamImport     1 KFFEVFPTLKVK----DDMRLLLQDVEVSKVTTNSNRDFVRIHIESAHLLQKKMIYRVESMVKEQLFGKN-RLQIEV 72  
10_pfamImport    1 RFFEVFDGIKVD----AELLELFSDIMVKRIVNNRAKSSIRIYIESNRLIHKSDIYKIEKAVASMF--ND-RLSVKI 70  
9_pfamImport     1 KFFDVFQTIKLN----DELTAMFEYVDITKIATNVDHTKMRIYIESSRLIEKSAIFTVRDEIARNLRTGK-RVEIEI 72  
WP_013283136     4 MFFEAFPMLKVD----DDIFNDMKSVEIEKISSTKKHDFIRIYIKSSILIEKSTIYKIEKSIQDQLFSGV-NVTVKV 75   Butyrivibrio pr...
WP_013978270     4 LFSDVFCELQLT----EDMQTFLKDVSVSRVTTNREHTRLRVYMESPHLIDKMRIFQLQDLISRQLFHKK-MEVIII 75   Clostridium sp....
WP_013120246    16 nLFDFIAEADLP----DEVKKVLLQASVAKVEISNAKKMWRIHLTLPEIVETKHLKVLEQLIAREIPQLS-KVEFAI 87   Thermincola potens
18_pfamImport    1 LFEKVFDGLKLS----ANVKTVLKNTLVDNLSISTKGRKMIVDLSSDIFIDENCIVDFREDLADAFPDLN-TIDINL 72  
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