Conserved Protein Domain Family
MEDS

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pfam14417: MEDS (This model is not part of the current CDD release)
MEDS: MEthanogen/methylotroph, DcmR Sensory domain
MEDS is prototyped by DcmR and is likely to function with the PocR domain in certain organisms in sensing hydrocarbon derivatives. The MEDS domain occurs fused to Histidine Kinase and as stand-alone version. Sequence analysis shows that it is a catalytically inactive version of the P-loop NTPase domain of the RecA superfamily.
Statistics
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PSSM-Id: 494259
Aligned: 97 rows
Threshold Bit Score: 65.4733
Created: 22-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012302977   16 HAVLLTSRSNFNYEPIAEFIAAGLAAGERCL-VLTgdgrfaerfSHWFQQVRERGALDLKPLYEYVAREQFGFRASDGFY 94   Candidatus De...
Q0W377         21 HFCMFYKTGKDLVDIIIAYFDAGLKNNEFCMcVTAd--------PVDAVEMERLMRAAMPRFDEYLQRGQVEIVPYSQWY 92   uncultured me...
Q8TR62         21 HFCQFYHTEEDLIDILVPYFKAGLENNELCVwIISq--------PLEVEEAKAAMKRAIPDIDVYLEKGQIEIVPYTHGY 92   Methanosarcin...
Q8TP40         21 HFCQFYQTKEDLMEILVPYFKAGLENNENCIwITSq--------PLEVEEAKEALRRAVPDFEIYLKKGQIDIFPYIHGY 92   Methanosarcin...
Q8TSN6         21 HFCQFYQTKEDLTDILIPYFKSGLENNEFCFwVTSq--------PLVVEEAKEALRTAIPDIDVYLAKGQIEIVPYTQGY 92   Methanosarcin...
Q8TT85         81 HFCQFYQTKEELVEILVPYFKSGLENNELCVwIISk--------PLEVREAKEALRRVIPDFDVYLEKGQIEIIPCTHEH 152  Methanosarcin...
Q8TU70         31 HFCQFYQTKEDLMDMLVPYFKAGLESNEFCMwVTSq--------PLEVEKAKKALRKSVPDLDIYLEKGQIEIIPCTCWY 102  Methanosarcin...
Q8TRB0         21 HFCQFYQTKEDLMDVLVPYLKAGLENNEFCMwVTSq--------PLDVKDAKEALRRAVPDLDTYLEKGQIEIIPYTHWY 92   Methanosarcin...
Q8TPC2         33 HFCQFYHTKKDLMDVLASYFKAGLENNEFCMwVTSq--------PSETEEAKEALRKAVHDFDVYLEKGQIEIVSSTHWY 104  Methanosarcin...
Q8TRA6         21 HFCQFYQTKEDLIEILVPYFRAGLENSEYSVwITSe--------PLETGEAKEALRKAVPDIDVYLEKGQIEIISCTHWC 92   Methanosarcin...
WP_012302977   95 LREGTFRSDVVIRQWRHLLAEARAAGHRGLRVVGEVGWLWHSvNLRGFLRYEDELSQRLPDGDFTALCVYFAEDLKPVDL 174  Candidatus De...
Q0W377         93 VIDGVFDQKRVLDGWEKKLRQAQDRGFEGIRVTGNTFWLDKP-IWKDFIEYESAINGAIDGRNFLVLCSYCLDRCSANEI 171  uncultured me...
Q8TR62         93 LKGGIFDPDGVVNSWVEKIDKALARGYDGLRAAGDNRWLEKE-GWSGFIDYENKVDAIIGKSHVIALCPYYLDMCSTTEV 171  Methanosarcin...
Q8TP40         93 INEGVFDSERAVNGLKEKLNQALESGYEGLRVTGDACWLEKE-GWTDFVNYENKVDSVIEKHQMISLCSYHLEMCNATEI 171  Methanosarcin...
Q8TSN6         93 VNGEVFDSKQVINAWAKKFDQALSRGYDGLRVAGATPWLKKE-EWKDFAAYEKRGDANTGKQHMISLCPYSFDVCSAADI 171  Methanosarcin...
Q8TT85        153 INEGVFGSEKVIKGRVKKSDPFLAGGYDGLRTAGDTPWSKKG-ELDDFVDYESEVDANIGKYQTISLFPYFLDMCSTVDI 231  Methanosarcin...
Q8TU70        103 LNEGIFDSRRILNGYVEKLDQALANGYDGLRLSESTFWGGKK-DWNNFVNYEKEIDRVIGNYHMLALSTCPLDRCSATEI 181  Methanosarcin...
Q8TRB0         93 VQEGSFDSERVLNGWIEKLNKALANGYDGLRLTGNTFWLEKK-DWNDFVDYEEEVDRVIGNYRMIALCTYCLEKCNSTEI 171  Methanosarcin...
Q8TPC2        105 VQEGSFDSERVLNCWIEKLNKALASGYDGLRLRENPFWQEKK-DWSSFDNYEKELDRIIGNYRMISLCTYSLDRCDATEI 183  Methanosarcin...
Q8TRA6         93 LKNGVFDKESLLNRWVEKIGQALKNGYEGLRTATNISWLEKK-DWNDFVDYEEQGDGVVSNCPVLSLCTYSLDRCNAGEI 171  Methanosarcin...
WP_012302977  175 EQLIQSHT 182  Candidatus Desulforudis audaxviator
Q0W377        172 IDVVSTHQ 179  uncultured methanogenic archaeon
Q8TR62        172 IDVVSNHQ 179  Methanosarcina acetivorans
Q8TP40        172 LDIAFNHQ 179  Methanosarcina acetivorans
Q8TSN6        172 IDVAFNHQ 179  Methanosarcina acetivorans
Q8TT85        232 LKIAFNHQ 239  Methanosarcina acetivorans
Q8TU70        182 IEVVSSHQ 189  Methanosarcina acetivorans
Q8TRB0        172 VDVVINHQ 179  Methanosarcina acetivorans
Q8TPC2        184 IDVVSKHQ 191  Methanosarcina acetivorans
Q8TRA6        172 IDVVANHQ 179  Methanosarcina acetivorans
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