Conserved Protein Domain Family
hAT-like_RNase-H

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pfam14372: hAT-like_RNase-H (This model is not part of the current CDD release)
hAT-like transposase, RNase-H fold
This domain is part of an RNase-H fold section in a number of hAT-like transposases, such as protein DAYSLEEPER (At3g42170) from Arabidopsis. Protein DAYSLEEPER is essential for plant development and can also regulate global gene expression. This entry also includes some uncharacterised fungal proteins.
Statistics
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PSSM-Id: 521182
Aligned: 37 rows
Threshold Bit Score: 64.566
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_012701931 449 CNCKLPTV-------GLVFFFM-DHVFELIKMCHN--S-SHQeWLKNVASNMSE---TADNFIsE---AYSIYTFTAAIL 511
Q0JRB0       451 CTCKIPTV-------GLVFFFM-DHVIELINVCHD--S-TRQdWLKKIASDMSE---TAHNFAsQ---AYNIYTFTAAIL 513 Japanese rice
EES02615     450 CNCKLPTL-------GLVFFFM-DHVFELINLCHN--SnNHQqWLKNIAGDMSK---RAEKFTtE---AYNIYTFTAAIL 513
6_pfamImport   1 SGSKYPTA-------NLYFHQI-WEVKKMLEIECL--N-SHH-VIASMVCQMTQ---KLEKYW-N---LSFLKICIPVIL 61 
EER98838     454 STKRYPTP-------AHLFNML-WNVKQDVHYEsliycyKDDdTFSKILVKMQN---KFKESW-K---ICFFHCCMPMIM 518
XP_015692324 584 SSPSSPTA-------NMYFNEI-WKIRTVLQEEAL--N-DHR-DIATMVMMMQE---AFNEYW-Q---NSYLWLAIPVVL 644
XP_015695844 211 vsspqyVF-------NSYFHVL-WSVRTTLQELST--V-RNI-ERIVDVGKMQE---NFDRQR-R---RVYVWLSMAVVL 271
Q0CWP2        55 SENTGPTVhrvydiyNDLFDHLdLAINRLRNKRasw--------kqQILEGLEEahkKLRKYYrRtyqAEGYIYAIATIL 126 Aspergillus ter...
KAG5068093   307 ydstlfflghcmlllTLFFKML-VSIQKSINKWRH--N-DDI-VIQRMTSNMQL---KFNKYW-Esg-gINYLLVVVVFL 376
KRH42564     438 SGYLNVSS-------NSFLRMW-VKIQNALRSWME--N-DDF-GLQQMATTMKL---KFDKYW-DidgNINNLLFVAIFL 501
XP_012701931 512 DPRIKG-ELIPETLNSAS----------NLEDARNHFVRDY 541
Q0JRB0       514 DPRIKG-ELIPETLNSTS----------NLEDARNQFVRDY 543 Japanese rice
EES02615     514 DPRIKG-ELIPETLNSTS----------NLEDARNHFVRDY 543
6_pfamImport  62 DPRFKL-SFLEYRLKQGLermeadeylkKIETTIRELFTEY 101
EER98838     519 DPECRL-ERIKSSVWLFGse------knDVLRTLASLFNEY 552
XP_015692324 645 DPRFKF-SFIEFRLKRAFgtdsa-sylsVIRETVRELFNEY 683
XP_015695844 272 DPRYHI-NFIEQRFRQAFgnday-myisEVRGKLFELVMHY 310
Q0CWP2       127 DPTSKLeKFKTATWLDDDtdw-----yqKYRTVFEKVFHFY 162 Aspergillus terreus NIH2624
KAG5068093   377 DPRCKC-EYIQFCFNPMYgveksmymmkKLKDPIHKLIQQY 416
KRH42564     502 DPRFKF-KYLEFCFGRMYgpekckdmlkKLEDFIKELFTQY 541
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