Conserved Protein Domain Family
Abi_alpha

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pfam14337: Abi_alpha 
Abortive infection alpha
Enterococci such as Enterococcus faecalis and Enterococcus faecium are part of the normal human gut microbiota. However they can also be a source of nosocomial infections specially in immunocompromised patients. Virulent bacteriophages, i.e., viruses that infect and obligatorily lyse bacteria might provide alternative options for combating them. Yet, bacterial resistance to phage is taking place in similar fashion to antibiotic resistance. This might be, in part due to temperate phages that are stably associated with their host. They compete for their bacterial host, in addition to repressor-dependent immunity against similar phages, some phage express genes conferring resistance to infection by more or less unrelated phages. They can encode abortive infection (Abi) mechanisms that cause an interruption of invasive phage development and a premature death of the infected bacteria. For instance, E. faecalis V583 prophage 6 confers resistance to the virulent phage Idefix infection mainly due to Abia-alpha protein. This Pfam family corresponds to Abi-alpha protein sequences which is mostly found in prophages, arguing that it is essentially a temperate phage weapon to fight against other phages.
Statistics
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PSSM-Id: 494180
Aligned: 19 rows
Threshold Bit Score: 147.529
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q6N3W5        76 RARAIELEQ---LNPIPTRIAHDYEDGIEREDEEILQQLWANLLINVTDPQTGILPRKVFRDILGKLDPEQALFLNELGl 152 Rhodopseudomona...
Q7MW12        79 KIEATPAERl--TEPEPYVVVPAIQQLGYSHSSEELRELYANLIVSSMDVEKKGLVHPAFVDILKKLTPDEAKIIQYFK- 155 Porphyromonas g...
2_pfamImport   1 KLEKIPEEKr--CKVHPQLGTPIIEKLTYTTNEE-IADMFTTLLANASSVDMVNTAHPSFVSIIERISPDEARIMRCFQ- 76 
Q12J20        64 KLALLPPEEi--TFSNPRVALQALDQAKFLVNEIQIQELFSQLIASSLNENKKSFIHPAFIEIIKQLQSDEALILKYMAr 141 Shewanella deni...
3_pfamImport   1 KVNAIPEESr--LEPNTHVICTALDNMRFCVEEKELREMFSTLIANSVNAEKTEYVHPSFGEIIKQMTPLDATILKEMS- 77 
Q03R99        63 HITDIPEEYr--DSSKVNIVLKAVDDSKFRLDDNEMQEAFARLIANALDKRTNKDFYPSYSDILSNMSYSEALTLKRIYs 140 Lactobacillus b...
Q830F4        66 KTDSIPVDNr--DDSKLGFALKTMEDARYQLEDEDMREYFSNLLAGLVDNRKNQDSSPRFSIILSELTTIDANLLKKLY- 142 Enterococcus fa...
1_pfamImport   1 -FSKIPQTSl--KEPVEYILYPAINESEQYLSNETLRNMFARTIASTFNQDKEKDLHSAFVQIIKQMTPLDAQNLLLINq 77 
Q8E112        73 DVVSKNIENl--QEPSLSIAGPALEASKFYLEEEELRNLFTKLIASSMDKSKNEFNHPSFIEIIKQFDKIDAQNFKIISd 150 Streptococcus a...
WP_012073144  94 KINRLSDDNreiATENLPTLASATEALLYVENQFDLREMFENLIVNTIDNTK--ITHPSFVEIIKQLSSEEAKILKVIL- 170 Actinobacillus ...
Q6N3W5       153 ridtiqfyfivcnafhngQSGCELAFAPFEARKD----------EIVSSELFSYNSSEDSHSFFVLWPTEKV-----EAT 217 Rhodopseudomona...
Q7MW12       156 -------------------GRDFIEYLDLRAYIKe---------EEGGGFRTIADHKTLLSDEVNFFMPDNE-----LAY 202 Porphyromonas g...
2_pfamImport  77 ----------------------------YKRDWEycsy--nanlNDAEGFVKLKEHLTLLDDNAKITFPQNM-----NAY 121
Q12J20       142 q---------------dsHRSGSGPTIDISIKSG----------DENFSSESIIPEFNLIAEDAGCIYPEKC-----SSY 191 Shewanella deni...
3_pfamImport  78 -------------------TKRRIPVLVVKCKFEng-------gEIALTNNLIWNDWGNINRV--------------AAS 117
Q03R99       141 ------------------NPFSHVPISTKTSSNMdgs----esyNLSPRTYLFDNKNDSSNQT--------------NIA 184 Lactobacillus b...
Q830F4       143 -------------------KLSITPTIKVRVQAPngngidyienLILTQKGIVENNFSDL-----------------SPS 186 Enterococcus fa...
1_pfamImport  78 e----------------gNNLIANLQIGVHYSKE--------------NLSGTVNKANNIYLSKLDYSPDII-----ASS 122
Q8E112       151 lyfkkgfv--atgtyyttIIGQDKPLEHIASHVF-------------------------------VDNLEQNdiaiqSSS 197 Streptococcus a...
WP_012073144 171 ------------------------PLNHMALSEChl------ilNEQNSFHVLYRNLICLYSKDKPFWLENI-----PSY 215 Actinobacillus ...
Q6N3W5       218 VDILQVTGLVHWRNELH-LAEELFdtdlnltgakdpaeigRLVLANASGiRAFSL------------------------- 271 Rhodopseudomona...
Q7MW12       203 LQNLVCLGILKDCEGTFtVIEDN-----------------YKLIENKLGlESLRNqyvpeqfssi---------rseksf 256 Porphyromonas g...
2_pfamImport 122 IYNLISLGLLVDMSGEYkIYREN-----------------YDAINKKNGlDDLRNelvpqkfksi---------dveesf 175
Q12J20       192 FENLKRIGLIAHHSGTP-----------------------YSQDQHLRIfESEKAkavyesekypvg----saatwkfgc 244 Shewanella deni...
3_pfamImport 118 LDNLSRLELINIRLEDH-YTDEAA----------------YTDLKNETHvKNVIElcgkrcpegge-------lsftqgl 173
Q03R99       185 IDLLVHSGLVDVREDAW-LTSPYFtk-------------kYDAFEKLEKaSPLasispqrki------------dfkkgv 238 Lactobacillus b...
Q830F4       187 LQTLRSYGLIDIRPSIE-LTQKKHtk-------------iYDDFENSTYfKTLKYnlnsffanssffkdtgfsiisirgs 252 Enterococcus fa...
1_pfamImport 123 IDNLTRLGLIKVDYLHYpLDSN------------------YESIKQTTIyKSLESeintlnlfktsnt--kydikiekgk 182
Q8E112       198 LTNLERLGLIQINYKAH-VDEKEY----------------YNILNNSFItKKNSElkeqnkrvl-----------tnlgm 249 Streptococcus a...
WP_012073144 216 IDNWARLGLVTVSLDNY-FSDKKA----------------YGKFDEHPIiKRANLqykdleppkk--------lnikngl 270 Actinobacillus ...
Q6N3W5       272 ---SQLGEEFVRAV 282 Rhodopseudomonas palustris
Q7MW12       257 yqvTDFGRNFINTV 270 Porphyromonas gingivalis
2_pfamImport 176 irlTPFGRLFLNAC 189
Q12J20       245 yyfTGFGREFAQAC 258 Shewanella denitrificans OS217
3_pfamImport 174 ikiTDF-------- 179
Q03R99       239 vslTNFGTSFVKFI 252 Lactobacillus brevis ATCC 367
Q830F4       253 ihvTDLGFLFCSKI 266 Enterococcus faecalis
1_pfamImport 183 vslTDFGKKFISVC 196
Q8E112       250 itlTLFGVRFSKTC 263 Streptococcus agalactiae serogroup V
WP_012073144 271 ltiTDFGKAFAKAI 284 Actinobacillus succinogenes
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