Conserved Protein Domain Family
PDDEXK_4

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pfam14281: PDDEXK_4 (This model is not part of the current CDD release)
PD-(D/E)XK nuclease superfamily
Members of this family belong to the PD-(D/E)XK nuclease superfamily.
Statistics
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PSSM-Id: 494131
Aligned: 14 rows
Threshold Bit Score: 81.3074
Created: 22-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012065035   33 DTFYLWRK--GSKELFWSAVTATDFENEarNAlikglsensTGNVnSLVSGYMsHLRRFRLFlSSDEIIAPveykqqitv 110 Alkaliphilus m...
jgi:Rmet_6082   7 NFYAVGGA--GYLENPTSDLMALFMGAE-------------PQAPrWLAKALL-SCLANRGL-AEGIIVESv-------- 61 
WP_012204995   27 DILDVITL----NENQHSDMLAWCLTPG--EG---------HGQGdSVIKDFLeAAYQKSDA-AIYDNKKffrkwtp--- 87  Delftia
jgi:Rmet_3347   9 GQLDLLTP----RENQHSDLLAWCFNAR--EG---------HGQGdAILKDFLvALYGAASD-VEPGDRVAgkglsrdfi 72 
WP_012399672   27 DFLDVVSL----TETQHSDMLAWCLHPN--EG---------HGQGdAVVKDFLiAAYTAGVE-SNKYSNKNfyrkwtp-- 88  Paraburkholder...
WP_011743900   36 NAFDVLGIarAE--IRHSNVLAWLMDPA--EN---------HGLDdGVIRGFV-DYAARGMG-GDGVFDDLl-------- 92  Bifidobacteriu...
WP_012411427   32 NIFEAIGVvrQE--LRHSNFLAFLLNPS--EN---------HRLDdIFLKRFLkRVLLEEYE-PTDEKYTKvspvd---- 93  Nostoc punctif...
WP_011965187   30 NLFKVINMt-SDETRVHSAMIADLLNPN--GQ---------HQMEnVFLKLFI-ERLNGQTD-HIVSFTCD--------- 86  Phocaeicola vu...
CCY31686       25 NIFSVLQI--QSKEVLICRMIADLLNPR--GQ---------HGAGaEYLKIFLrDCLGMEKM-DTk-------------- 76 
WP_012290334   26 NIFFQLLNpyDE-VNLHSKLIYSILNDC--------------KFKkEFMLSFL-KITGIISS-DNINPSDL--------- 79  Finegoldia magna
WP_012065035  111 kpkpasreiiinkmyvggyLSEGDNIGHEiinlykaddgkNYIYLNSqgTIELSR----GENSITVLLVRKFASKIYK-V 185 Alkaliphilus m...
jgi:Rmet_6082  62 -------------------DWDGVTAEREvaq------tdQESDSVK--RLDLVI----SDGDFVLGIENKVYATARGnP 110
WP_012204995   88 -------------grirvsSFGSAFVTREfvvs----vkePGQEEKRtgRLDLFIv--dPQNKLLIAIENKVGARLTEeQ 148 Delftia
jgi:Rmet_3347  73 r--------qwtparvlttSFATAFCYREyt-------lpRIDGDGGarRLDLLVv--dQANRLLIVVENKAGTRFRTgQ 135
WP_012399672   89 -------------grirtaSFGSAFIAREfs-------lnSGLEKKRg-RLDLFLi--dPSNKLVVTIENKAGASLTEaQ 145 Paraburkholder...
WP_011743900   93 ------------------mDCDGFSIRRE----------------WH--CIDILAv--nYDAGYVLCIENKIFSGEHDdQ 134 Bifidobacteriu...
WP_012411427   94 ---------------idiaDFTDADVRRE----------------WQ--NIDILIh--sPRNKLVCAIENKIDAGESIdQ 138 Nostoc punctif...
WP_011965187   87 ----------------------NAKVECEkyi------gpKTDTDGG--RLDIYL----TDGINHIVIENKIYATDQEnQ 132 Phocaeicola vu...
CCY31686       77 -------------------LADQAIVTAE-----------YAIDDER--RIDIVI----EIGSYFLPIEVKIYAADQKsQ 120
WP_012290334   80 ---------------------KIIDVERE------------KSFSNG--RLDLFIsckiKDKNYVIIIENKIFARDQYeQ 124 Finegoldia magna
WP_012065035  186 LAKAEGimildFADSKLpr--kQRYKGQVALGLtyGGVSlvdlfnENSYRGSLEE--------------------EKNAY 243 Alkaliphilus m...
jgi:Rmet_6082 111 FHVYDR-----LLAERA------AGGPIIKCVL------------RPTDRTSDVP----------------------LGW 145
WP_012204995  149 LARYQG-----AINKEIgsrpiFKDYEFAYVVLdrEL--------DWYTDDKLNA--------------------LGKRW 195 Delftia
jgi:Rmet_3347 136 LEGYLE-----SVQRTLltrpaFREFSVVFVALdrDYLV------NDDDESGAQD--------------------FDRRW 184
WP_012399672  146 LSAYYS-----AVSEQIasrpvFQEYDFAYVVVdrDL--------SEYPDEHLDA--------------------LGSRW 192 Paraburkholder...
WP_011743900  135 LARYCG-----EVEKAY------PAYRRRFIFL--TPDA------RNASKASDAEdwlamgygdvlgiigqaveaHGPAP 195 Bifidobacteriu...
WP_012411427  139 LIKYQR-----TVKEEF------KDCRAILIYL--TPVG------ELPSQKNWRIynyskiae----iidsicisYESTL 195 Nostoc punctif...
WP_011965187  133 LLRYHN-----FLKRCS-----KNKNNTLLLYL--SLDG------EVHDIDKTTGg-------------------EEITF 175 Phocaeicola vu...
CCY31686      121 CFDYYQ-----YAKRRD--------AQAKVYYL--TLDG------HRPGKDSTSSgnr---------------svTEEDI 164
WP_012290334  125 MDRYIE-----FANNRQ-------ADIKKVFYL--TLLG------NAPSEDSASN---------------------LDQI 163 Finegoldia magna
WP_012065035  244 TTFVAdrvikpkNQIYITDDESVSGdntffIRTNKGFGKQTLR 286 Alkaliphilus metalliredigens
jgi:Rmet_6082 146 PVVTY-------PDLVKTALDLLGQe---fVRAPVSKWHFFYR 178
WP_012204995  196 ALLDY-----------SWLEASARRar--lQVTRNNQAAQLLV 225 Delftia
jgi:Rmet_3347 185 VRLNY-----------EWLKPAGKRae--fSVERGNQSAALLL 214
WP_012399672  193 TLLDY-----------SWLEASANRar--rHMERNNEAAQLLM 222 Paraburkholderia phymatum
WP_011743900  196 AQAQF---------ISEYMDAVRRD-----ILGDEELERICMK 224 Bifidobacterium adolescentis
WP_012411427  196 GTDIY-------TLMSHYSTLIRRH-----IVSDSEVAELCRK 226 Nostoc punctiforme
WP_011965187  176 FTISYa------DFILNWLTDCRHK------VIDKSLIREGIA 206 Phocaeicola vulgatus
CCY31686      165 VCLSFr------EHILNWLKACKNC--------GNTGMIPILE 193
WP_012290334  164 NLISYd------DEILTWIENCIKI------SAREPALKEVLI 194 Finegoldia magna
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