Conserved Protein Domain Family
Retrotran_gag_3

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pfam14244: Retrotran_gag_3 
gag-polypeptide of LTR copia-type
This family is found in Plants and fungi, and contains pol polyprotein-like retroelements or retrotransposons of the copia-type. It is a short domain at the very start of these polypeptides.
Statistics
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PSSM-Id: 494098
Aligned: 14 rows
Threshold Bit Score: 55.8433
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEF49106      34 HHSDQTGGALIPISLEEDNYQTWQEAIIDALDVKNKAGFIDGTQKKPE 81 
5_pfamImport   1 FSADNPGALITSVQLKGENYSEWATEMMNALQAKRKTGFIDGTLKKPP 48 
1_pfamImport   1 VGERDDSLQSISVRLDGNNYSYWSYVMRNFLKGKRMWGYVSGVLSKPI 48 
Q84JT5        26 HPSD---FSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPD 70  thale cress
EEF42385      33 HPSDHLGLVFVTTPSTRENFASWKNSMETALYAKSKGGFIDGSLQLPK 80 
4_pfamImport   1 HPFENAGSSLLPGVFDGTGYRSWRRAIFRALSVKSKTGFINGKVVKPN 48 
3_pfamImport   1 HPSDSPGMVLVSVQFDGIGYRSWRRGVMRALSVKNKLGFIDGSC-GPT 47 
EEF28006      29 HHTENHSSVILTPELTAINYTSWRSSFLLAISIRNKQDFLNGSTIKPP 76 
EEF32709      31 HHAENHSPVIVSPELTSMNFASWKRSFLLVVSIRNK----QVSISKPA 74 
EEF31276      12 EIEPNTSLRLTSVLLNGFNYVSWSRAASLALLGRSKLSYVNGKKEAPK 59 
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