Conserved Protein Domain Family
RRXRR

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pfam14239: RRXRR (This model is not part of the current CDD release)
RRXRR protein
This domain is found in bacteria, eukaryotes and viruses, and is approximately 180 amino acids in length. It contains a conserved RRXRR motif. It is often found in association with pfam01844.
Statistics
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PSSM-Id: 494094
Aligned: 48 rows
Threshold Bit Score: 129.213
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_005316048      15 VFVLARDGVPLMPCHPA-RARELLRRSRA--VVV----RLAPFTIRLKDRGRGESe-VA-GVQLRIDPGSKATGIAV--- 82  Streptomyce...
WP_014003755       3 VFVMDQYGRPGHPTRRMdWVRKQLKHKRG--KIVgggiSGKPAVLVLREQSFDRSktVKrRFFVTLDTGFRNVGYAVtel 80  Acidithioba...
WP_013277332       6 aFVLDNEGKMLDPTKAK-KAWYLIRQGKA--ELV----EEYPLIIQLNRTVPSSQinDD-EIVLGIDDGAKYVGVALvqd 77  Acetohalobi...
WP_015325818       6 aFVLDSKGKLLDPTKSK-KAWYLIRKGKA--SLV----EEYPLIIKLKREVPKDQvnSD-KLILGIDDGTKKVGFALvqk 77  Halobactero...
WP_015327521       7 aLVIDNEGKILDPTKVK-KAWYLIRKGRV--KLV----EEYPLIIQLKKKIPKEEvnND-KIVLGIDDGYDKVGFALiqk 78  Halobactero...
WP_013320562       4 VPVISKEGKPLMPTKSS-RARKWIKDGKAvgKFN----DLNQFYVQLAVEPSDSK--IQ-LISIGIDPGKLFSGIGVq-- 73  Gloeothece ...
WP_015224453       4 IPVVSKDGQPLMPTKPS-RARKWIESGRAisKWS----DLGLYYVQLLQEPSGTE--TQ-PVVAGLDPGKSYSGVGVq-- 73  Halothece s...
tgen:AM1_B0246     5 VPVISPEGQPLMPTKPS-RARRMVRDGKAvgKWN----DAGVYYIQLTADPSDTQ--TQ-PIHLGCDPGKSYSGIAVq-- 74 
WP_015078910       3 VPVISVDNTPLMPTKPS-RARRWIKCGKAigKFD----KLGIFYVQLLAESSNTE--TQ-EIVLGLDPGKLFSGIAVq-- 72  Nostocales
jgi:Mic7113_0487  21 VPVISPDGLPLMPTKAS-RARRWLNEGKAkiYSN----DLNVFAIQLVGKPSGHE--TQ-DVVIGIDPGKLFSGVGVq-- 90 
WP_005316048      83 ---TDTkaerlvggstatvrRGLVSVELLHRGEQIRRAMAQ--------------RAGYRRRRRSANC----------RY 135 Streptomyce...
WP_014003755      81 ladGTL--------------RVLLKGTLTARTPELRGLMDE--------------RKMYRRARRYRRRlnvrkkgqtpKH 132 Acidithioba...
WP_013277332      78 cktKN---------------KVLFKAKMKQRQ-DVSAKMEE--------------RNDYRGYRRSHK-----------RY 116 Acetohalobi...
WP_015325818      78 cqtKN---------------KVLFKAVMEQRQ-DVSKKMEE--------------RRGYRRYRRSHK-----------RY 116 Halobactero...
WP_015327521      79 cqsKN---------------KVLFKATMKQRQ-EVSKLMTQ--------------RREYRRYRRQHK-----------RY 117 Halobactero...
WP_013320562      74 ---SSS--------------YSLWTGHLELPFKTVKKRMED--------------RRMMRRARRGRRI----------NR 112 Gloeothece ...
WP_015224453      74 ---SAK--------------CTLLQLHLILPFGRVRSRMDQ--------------RRLLRRSRRSRRI----------NR 112 Halothece s...
tgen:AM1_B0246    75 ---SAH--------------FTLYTAHLVLPFQRIKERLGAavikngkviknvrgRALQRRVRRGRRI----------NR 127
WP_015078910      73 ---SKK--------------FTLQMLHLVLPFKTVKDRMDQ--------------RSMMRRNRRGRRI----------NR 111 Nostocales
jgi:Mic7113_0487  91 ---SSK--------------TTLLKLHLILPFPNVTKKMTA--------------RRILRRARRGRRI----------NR 129
WP_005316048     136 ---------RAPRNRNR--ARSAGWLAPSLRHRVESVASVTDRLRRLAPVTEIHV----EHAAFDTHAMSEGRgLEAIEY 200 Streptomyce...
WP_014003755     133 ---------RPPRYESR--GKRD---SVTLQHGLETHRNLYARLARLVPLPDHQVtrgfESVSFDLRALAHGRpRTGSGY 198 Acidithioba...
WP_013277332     117 ---------RPKRFDNRfaSKRKGRLPPSIKQRKQAILRVVKHLSKHIRLDKIIL----EDVSIDIRKLTEGEeLYSWQY 183 Acetohalobi...
WP_015325818     117 ---------RPARFDNRssSKRKGRIPPSILQKKQAILRVVNKLKKYIRIDKIVL----EDVSIDIRKLTEGReLYNWEY 183 Halobactero...
WP_015327521     118 ---------RAKRFDNRssSKRKGRIAPSIKQKKQAILRVVNYLNKFIRIDKIVL----EDVAIDIRKAVEGKeLYSWEY 184 Halobactero...
WP_013320562     113 nlpfelrahREKRFNNR----KQGKLPPSIRANRQLELRVIKELCKVFPITDIYF----EYVKVDVDLTSGR---KKARS 181 Gloeothece ...
WP_015224453     113 dvpfklrnhRQKRFDNR----RGKKLAPSIRASRQLEIRVVKEIASIYPITAIGY----EKVRADVDLTSGR---KGARS 181 Halothece s...
tgen:AM1_B0246   128 kvpfhlrahRQKRFNNR----RQPKLPPSIKASRQMELRVIKELSKIFPITSIVY----EVVKADVDRTSGR---KGAKS 196
WP_015078910     112 klsfnkrnhRQARFDNR----RGSKLPPSIRANKDLEYRVISLLLQLYPIKTVVI----EEVE--------------ARG 169 Nostocales
jgi:Mic7113_0487 130 klpydqrchRAKRFDNR----VQKKLPPSIRSNRQLELRVIKEIMRLFPVSNIVY----EYIK--------------ARG 187
WP_005316048     201 RR 202 Streptomyces pristinaespiralis
WP_014003755     199 Qv 200 Acidithiobacillus caldus
WP_013277332     184 QE 185 Acetohalobium arabaticum
WP_015325818     184 QE 185 Halobacteroides halobius
WP_015327521     185 QE 186 Halobacteroides halobius
WP_013320562     182 GK 183 Gloeothece verrucosa
WP_015224453     182 GK 183 Halothece sp. PCC 7418
tgen:AM1_B0246   197 GK 198
WP_015078910     170 NK 171 Nostocales
jgi:Mic7113_0487 188 DK 189
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