Conserved Protein Domain Family
Retrotran_gag_2

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pfam14223: Retrotran_gag_2 (This model is not part of the current CDD release)
gag-polypeptide of LTR copia-type
This family is found in Plants and fungi, and contains LTR-polyproteins, or retrotransposons of the copia-type.
Statistics
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PSSM-Id: 521121
Aligned: 33 rows
Threshold Bit Score: 112.744
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ERM97817       80 MLSKNAKAKYALICGLDRDIFKNIEQASTAYDMWKMLEVTHQGTSAMKETkiqIYSTQYENFKMKSDETIANMYTRFTTI 159
17_pfamImport   1 YVKSSNIAFGLMLLHMDADYHHVVDDCEEAWVAWTRLKTLYGGSQKAGRI---YLKRQLFSMEMSEGGNVLHHCNEVLNI 77 
20_pfamImport   1 WKVNDMKAFANVCTMINPSLQSMVRIAATTAESWGILKSFFLRRSIHNRV---QRRRQLHKFKMQKGASVMDHFLKFDEL 77 
13_pfamImport   1 WLLNDMKALGLIAQGVAVEHHTKIRSATSAIMAWNTLRDFYNRTTMHNRV---TMTRRLHEFKMEGGVTMAKHLDDFDEL 77 
14_pfamImport   1 WLVNDAKALGIIAQGVELQHQTKIRSATRAIQAWGTLREFYNRTTLHNRV---TMTRRLHDFKMDDGTSMAKHLDDFDEL 77 
11_pfamImport   1 TSSKEQQAHAAIVLSLNDSQLMHVVTAKSAKEAWDKLEKFHRAQDVANRL---WLKEKFSSFKYTTS-SVSKHVTELEQL 76 
10_pfamImport   1 STAKEQQAHAAIVLNLNDSQLMHVVTSTTAKEAWDTLKKFHKTQDMANRL---WLKEKFSAFKFTAS-SVSKHVTELEKL 76 
18_pfamImport   1 WEDLDQKALSAMQLSLSTDVLREVINETSVFSLWKKLEALYMKKSLANKL---RLKKRLSTIRMAEGTSIRSHLNEFNSL 77 
KAJ0391638     54 FQRKSRKAFAMICLAMEDSQLPLVRSASGAQDAWSRLEAHFEKKSLANKL---FLRRRFFSAMMEDGDGVLQHINKLKTL 130 Pythium insidi...
XP_024581921    1 ---------------medsqlplvcsangaqdawsRLESHFEKKSLANKL---FLCRRFFTTMMSEGDDVLEHINKIKTL 62  Plasmopara hal...
ERM97817      160 TNGLNSLGKVLTQKDMVTKILRSLTKAYQGKVVAIQEakDLSTLPLEELIGSLMNHEIFMSAQ 222
17_pfamImport  78 SAKLSSIGAKMEDEDVAICLLRSLPKSYENVVLNLEM--SSAELRSQDVVKVLTNEHIKRQGE 138
20_pfamImport  78 GMSIQAIGDKVAHDERLVILLESLSDEYYQIIKIIENm-----------------rDIDLFQE 123
13_pfamImport  78 IVGLQTLGEPLDEARQLVILLSSLPTEYELICSIVEN---AKDFTLIEVKEKLLKEYERLDKK 137
14_pfamImport  78 VVGLQTMGEPVDEARQLVVLLSSLPAEYEMITSIIEN---AKDITLIEVKEKLLKEHERLEKK 137
11_pfamImport  77 VLEMKSAGCEPSDEDVCATLLRSLPASYESLVQAFRM--SMTELKLTDLVGKSIAEEVRQKDS 137
10_pfamImport  77 VMEMKNAGCEPTEEDVCATMLRSLPSSYEALAQAFRM--SVSEFKLADLVSKLIAEEVRQKDS 137
18_pfamImport  78 IIDLEKLDVKIDDEDKAILLVVSLPATFKHFKEIMIY----------DLFKRVILLDQSPDLN 130
KAJ0391638    131 AEKLDAVGAPVSEDDLVITLLGSLNESYQFLITALES--RSDTLSWELVTSRLMHEDLKRKEQ 191 Pythium insidiosum
XP_024581921   63 AEQLDAVGAPVSEEDLVITLLGSLGESYSFLITALES--RVDSLSWELVTSRLLHEDMKRN-- 121 Plasmopara halstedii
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