4RGH,4RGH,5C9F,4Z2Z


Conserved Protein Domain Family
gag-asp_proteas

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pfam13975: gag-asp_proteas (This model is not part of the current CDD release)
gag-polyprotein putative aspartyl protease
This family of putative aspartyl proteases is found pre-dominantly in retroviral proteins.
Statistics
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PSSM-Id: 521021
Aligned: 230 rows
Threshold Bit Score: 47.5508
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4RGH_A            47 INCKVNGHPVK-AF-VDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGT-Q-KiI----GRVHLAQVQIEGDFLP-C 117  human
XP_067513796     101 SKINIGDKTVK-VL-VDCGAAKTCMSKSLADALGLEIDAA-SESVFTLGNGS-K-Q-P----ALGVIYDVPIEVQEDLiI 170 
XP_067512621     213 SQVSIANKPIR-AL-IDCGAAKTCISKKLADELGLKIDAS-SESVFTLRNGT-K-Q-P----ALGVIYDVPVEVKRNMiI 282 
XP_067526552     558 SKTTIGDHRIR-TL-IDCGAAKTCMSKALADKLGLSIDAA-SETIFTMGNGT-K-Q-A----GLGVIYDVPVEVKENMiI 627 
XP_067513389     102 STVSIGDKNIK-AL-VDSGASKTCMSKALADALELEIDSA-SENVFTLGNGT-K-Q-P----ALGLIYDVPIEVKEDMvI 171 
XP_001324059     126 IKCSINGVEVV-AL-IDTGAQSSIIPHALAKKCNVKYLIDARYRTLTKGVGM-QtS-K----GVIHGLNVKVGNEVWT-N 196 
ASGPB:GKIL_3176   65 VKVKINDQESC-FLaVDSGAYGVQITPELAYKLKLPVKPREGGSAVLNGLGD-K-Q-TilisQEAYINSIKIRDIELTnI 140 
9_pfamImport       1 RTLQVNGKSIR-MQ-VDTGADVTLLSKEDWKKLGQPILN-TPTISVKSANHQpI-D-V----QGWFTCNVTIGN-EEQnL 70  
CCY14959         300 TDIGVNGRLLNaTI-IDTGTPFTLLSRADAETAGVRILTD--TVKVATLFGL-T-T-A----TTGYADEITIGGLSLRhV 369 
WP_014076429      73 VEGKANGHSIR-FV-VDTGATVVVLNRSDAAKLGIPYESLTSRSSMRTVGGA-S-D-M----RWARIDQIDMAGKRIEkI 143  Sphingobiu...
4RGH_A           118 SFSILE-EQ-P-MDM------LLGLDMLKR 138  human
XP_067513796     171 PCTVEVlPA-CpTHL------IIGNNWLNR 193 
XP_067512621     283 PCTIEVlPI-CpNQL------IIGNNWLSR 305 
XP_067526552     628 PCTVEVlPScP-THF------ILGNNWLIR 650 
XP_067513389     172 PCTIEVlPScP-SHL------ILGSNWLNR 194 
XP_001324059     197 RFVVLD-DT-L-DHA------ILGIDWLKK 217 
ASGPB:GKIL_3176  141 KASISA-LP-L-NTSei--dgLLGSELFEN 165 
9_pfamImport      71 KAHVAD------TET------LLGTDWLAR 88  
CCY14959         370 RILVRT-AG-D-DASghpltnILGLNELRR 396 
WP_014076429     144 NAAVVE-GG-L-PVS------LMGQNALEK 164  Sphingobium sp. SYK-6
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