2N39


Conserved Protein Domain Family
CHD1-like_C

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pfam13907: CHD1-like_C (This model is not part of the current CDD release)
Chromodomain-helicase-DNA-binding protein 1-like, C-terminal
This domain is found at the C-terminus of chromodomain-helicase-DNA-binding proteins, including Chromodomain-helicase-DNA-binding protein 1 from humans (CHD1), an ATP-dependent chromatin-remodeling factor which acts as substrate recognition component of the transcription regulatory histone acetylation (HAT) complex SAGA. This helical domain consists of five alpha-helices organised in a variant helical bundle topology. Its surface is positively charged and can bind dsDNA and nucleosomes, but its specific function remains unknown.
Statistics
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PSSM-Id: 520986
Aligned: 89 rows
Threshold Bit Score: 62.6148
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2N39_A         13 ICKERMRPVKAALKQLDRPEKG--LSEREQLEHTRQCLIKIGDHITECLKEYTn---pEQI-KQWRKNLWIFVS-KFT-- 83   human
8_pfamImport    9 qSAKLLKPVQENLDSLVKCTSQhfPERLERSIALKKEFKKVGHFISQSLRE-------KAS-PTEKARLWDFVAnNYWp- 79  
XP_003659385 1467 LVWSVLRPLKANMERIM-YSKErfPAAKERAKILGEEIRTFGSFLQNLRAENG-----ADL-DSLEPQFWEFLS-SIWpi 1538
XP_006670778 1550 MIWYLLKPVRDNFERILSTTKHkiKSSKERASIFAVELVVIGRFLDEKLPAT------VAD-ERLKDNFWEFLA-ALWpv 1621
XP_008080557 1414 MMRIVFKPVRESLKRIQAATKEriKSQKERANVMKSALVKIGDFIESQLRDSSp----SQV-TSLRPRFWSYVA-TFWp- 1486
XP_007293653 1418 MMRLIFKPIRDSLKRVQSATKDriESSKERASIMKTELIVAGDFIQDLIQEDEgkliqEDEgKKLKMRFWEYFA-GYWpg 1496
XP_001592377 1405 MLRKLFKPIKESLRRLQNGTAKniPNKKERAGVLKEELYSTGLFIDSITAPKKd---gSVD-NKLKDSLWEYVM-TYWpn 1479
XP_003856803 1359 RVRKIMEPIQSTLIKVSGATKKkmPEDDARLKMIKMGLVAIGNHITTQVQN-------NGQ-ASFEDKLWDYVSeHHWpq 1430
Q0UN07       1142 FIERRLRPVRDNLTRLKKATPKnyPQKEAMVKILKVELIAIGNFIRAETRDN----------EELEERLWSFTVnNYWp- 1210 Parastagonosp...
EWY99007     1548 MIWFLLKPVRENFERILSTTKDnvKSSKERASIFGVELVVIGTFLDEKLAAT------AAD-EGLKSNFWDFLA-ALWpv 1619 Fusarium oxys...
2N39_A         84 --E----FDARKLHKLYKH 96   human
8_pfamImport   80 -sKg---VEGSKLNDMYQK 94  
XP_003659385 1539 geVk---VSGKRLQRMFGD 1554
XP_006670778 1622 ddTsk-sVTGDRLSNMYKT 1639
XP_008080557 1487 -hPf---PDGERLEGMYQR 1501
XP_007293653 1497 -----saASPSKLEGMYLK 1510
XP_001592377 1480 -----pgQSTQAVASMYTK 1493
XP_003856803 1431 skSsdkrVSGHKLRDMYKK 1449
Q0UN07       1211 -rAs---VTVPAIKGMYQK 1225 Parastagonospora nodorum SN15
EWY99007     1620 ddTsk-sVTGKRLSNMYRT 1637 Fusarium oxysporum NRRL 32931
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