Conserved Protein Domain Family
RRM_5

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pfam13893: RRM_5 (This model is not part of the current CDD release)
RNA recognition motif
(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins.
Statistics
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PSSM-Id: 493786
Aligned: 6 rows
Threshold Bit Score: 186.54
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002431034   6 NFRHNPGFQGSPALLSTs---gALGVTTGPVMMVYGLDTKKLNCDKLFNLFCLYGNIARIKFLKTKEGAAMIQMGDGSAV 82 
1_pfamImport   1 GGNAPTDYYGYGADTGM-----VQPYKESGVVMVYGLEPGRFNCDMLFNMLCQYGNVNKVLFMRSKPDTAMVEMGSGREV 75 
NP_725914    148 PAGVVPGRNAPVAFTPQ-------GQAQGAVMMVYGLDHDTSNTDKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAV 220
2_pfamImport   1 SQRYGPSYGPPPPEYGP--------HADSPVLMVYGLEPSKVNADKVFNIFCLYGNVERIKFMKSKPGAAMVEMGDCYSV 72 
3_pfamImport   1 PGALGPLTLTSSAVSGRmaipgASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQA 80 
4_pfamImport   1 DPLFIPSATLEVAATGWiaipgLAGV-GNSVFLVSNFNLDRVTLQSLFILFSVYDNVQRVKILFNKKEYTLVQMANASQA 79 
XP_002431034  83 ERCVQHLNNAPMFDSknRLQLGFSKQPFLSDvTNPFVLPDGSPSFKDFIRN 133
1_pfamImport  76 QTAIDHLYGTEIFGS--RLELKPSKQGEVAY-KEPFELADGSPSFRDYSSS 123
NP_725914    221 ERCVQHLNNIPV-GTggKIQIAFSKQNFLSEvINPFLLPDHSPSFKEYTGS 270
2_pfamImport  73 DRAITHLNNNFLFGQ--KLNVCVSKQQAIVP-GQCYQLEDNSSSFKDFHGS 120
3_pfamImport  81 QLAMNHLSGQRLYGK--VLRATLSKHQAV---QLPREGQEDQGLTKDFSNS 126
4_pfamImport  80 QLDRSHMNGHKLHGK--PIGIILSKHQN----ALPHEGQKDEGLTKDYGNS 124
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