Conserved Protein Domain Family
Helicase_C_4

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pfam13871: Helicase_C_4 (This model is not part of the current CDD release)
C-terminal domain on Strawberry notch homologue
Strawberry notch proteins carry DExD/H-box groups upstream of this domain. The function of this domain is not known. These proteins promote the expression of diverse targets, potentially through interactions with transcriptional activator or repressor complexes.
Statistics
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PSSM-Id: 520955
Aligned: 48 rows
Threshold Bit Score: 317.995
Created: 16-Feb-2025
Updated: 28-Apr-2025
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_005851273 1297 NFLDQLVDELGGPQRVAEMTGRKARVVRDGR-GRGVYTLRARpdSSE----MDSLNIREKQEFMEGRKLVAIVSDAASTG 1371
Q1GW14         84 tALDAIIERF-GVDQVAEVTGRTRRLIVGRD-GRQKLQSRSP-----------RANVAETQAFMDGAKRILVFSDAGGTG 150  Sphingopyxis ...
WP_015449379  135 SALDHIIGHF-GTEAVAEVTGRSRRIIVDAD-GRQRIERRSA-----------RTNLAETDIFMRGEKRILIFSDAGGTG 201  Sphingomonas ...
WP_013041612  893 SALDEIIAHF-GTAQVAEVTGRSKRLVRDRD-GRQRLETRSA-----------RSNLGETAAFTDGSKRILVFSDAGGTG 959  Sphingobium
WP_014076277  853 tALDALIAHF-GTDRVAEITGRSRRIVTDVT-GKQKIERRGA-----------RANVLEVQAFQNGTKPIAAFSLAGSTG 919  Sphingobium s...
WP_013833361  901 aALDALLAHF-GSEQVAEVTGRTRRIVLDPR-GNQKLEPRGA-----------GARKADSDDFMAGRKPILAFSDAGGTG 967  Novosphingobium
2_pfamImport    1 -ALDALLEHY-GVSAVAEVTGRSKRLVRDGS-GQQRLESRSP-----------RTNLAETTAFMTGAKRILVFSDAGGTG 66  
WP_015328978  925 gLLDQINWHF-GHHQVAEITGRSQRIILED--GRYQLAQRPG-----------ASNLAETAAFQSGEKRVLIFSAAGGTG 990  Chamaesiphon ...
XP_005847874 1216 NPLDHLIELLGGEQHVAELTGRKGFVSKDEGsGRAMYVQRGG--DGP----QKDVNMREKEAFMEGRKLVAIISDAASTG 1289
XP_001416791  920 NPLDNLIALCGGHEHVAEMTGRKLHQVRQEN-GKIMTRKRMD---DTdaanAKLMNMTEKRKFQQGEKLIAIISDAASTG 995 
XP_005851273 1372 ISLHASAASRNQR-RRVHLTIELPWSADKAIQQLGRSHRSNQASAPIYKLVFTSVGGERRFAAAVARRLQSLGALTRGDR 1450
Q1GW14        151 RSYHADLAARNQA-RRVHFLLEPGWRADAAIQGLGRTNRTNQASAPLFRPVTTDVRGERRFISTIARRLDSLGALTRGQR 229  Sphingopyxis ...
WP_015449379  202 RSYHASLDTPNQS-RRIHYLLEPGWRADAAIQGLGRTHRTHQACPPLFRPVSTDCRGERRFISTIARRLDSLGALTRGQR 280  Sphingomonas ...
WP_013041612  960 RSYHADRDSRSAGyRRIHFLLEPGWRAAEAIQGLGRSNRTNQASAPVFRPCTTNCRGERRFISTIARRLDSLGAITRGQR 1039 Sphingobium
WP_014076277  920 RSMHSDRNCPTAHrRRAHFLLELGFRILSAVQGFGRSHRTNQMTAPVYRPLTTDCRGERRFLSTIIRGLEALGALTRGQR 999  Sphingobium s...
WP_013833361  968 RSYHADLGCGSASkRRIHFLLEPGWKAATAIQGLGRTHRTNQASPPVFRPVTTDCKGERRFISTIARRLDSLGALTRGQR 1047 Novosphingobium
2_pfamImport   67 RSYHASLDAKNQQ-RRVHFLLEPGWRADRAIQGLGRTHRTHQACPPLFRPVTTDCKGEARFTSTIARRLDALGALTRGQR 145 
WP_015328978  991 RSYHADLACANQQ-LRRHYLVEAGFEPIVACQGVGRSHRSNQAQPPEIVLLTSDVKGELRFTATIASRLSSLGAITKGQR 1069 Chamaesiphon ...
XP_005847874 1290 ISLQADRRVGNQR-RRCHITLELPWSADKAVQQFGRSHRANQVSAPLYRILTVPVGGEYRFASAAAKRLASLGALLRGDR 1368
XP_001416791  996 ISLQADKRVQNQR-RRCHMTLELPWSADKAIQQFGRSHRSNQSSAPLYRILMTPCGGERRFASSAAKRLLSLGALLKGDR 1074
XP_005851273 1451 RAa-sGLDLSELNFDSPLGRKSLRKMYD--FLV-----LESPLLPPgvslgpileglpaeevegflpvpedgrvtaaamv 1522
Q1GW14        230 QTggqNLFDPADNLESIYAKEALHRWFG--LLFtg--kLEAVSLGRfqe------------------------------- 274  Sphingopyxis ...
WP_015449379  281 QTggqGLFDPRDNLESDFARESLDQWFR--LLFqg--kLQSVRFDQfqs------------------------------- 325  Sphingomonas ...
WP_013041612 1040 QTggqNMFDPADNLESEYALEALRQWYQ--MLHag--kLQSVSLGDfcr------------------------------- 1084 Sphingobium
WP_014076277 1000 QTgsqNLFDPSDNLESDFARDALTQWFH--LLYeg--kLRSVSLDAfqe------------------------------- 1044 Sphingobium s...
WP_013833361 1048 QTggqNLFDPADNLESDYAREALTQWYH--LLHag--kLASTSLADfea------------------------------- 1092 Novosphingobium
2_pfamImport  146 QTggqGMFDAADNLESAYAKHALHDWYG--LLAtg--kLKSTSLKEfqa------------------------------- 190 
WP_015328978 1070 NTgnnGLFRGILDFTSPYAKSALAEFFA--DMNaq--gIDGISPTEfae------------------------------- 1114 Chamaesiphon ...
XP_005847874 1369 NAigaGSELKGFDIDNAHGEKALLRVLQdvCGEhgskpMPGVKVPElppelaeseflhtsgmde---------lmersgr 1439
XP_001416791 1075 RAlgaGQSLQAFDIDNAYGSEALKRMIS--DLKrdtdpMPTVQYTEaqlda----------------------------- 1123
XP_005851273 1523 aaiqrlharlRACVDLM--G--IGLAsprgdtvaedtaAAGAAGGK-----EVGDVRRFLNRLLGLAVWRQNLLFNYFQA 1593
Q1GW14        275 --------ltGLRIEAPd-GsmV------------------D---------DLPSIQRWLNRILALPIALQNAIFDEFMG 318  Sphingopyxis ...
WP_015449379  326 --------ltGLNLAGEg-GglT------------------E---------TLPTIQRWLNRILALRIDLQNAIFDEYLG 369  Sphingomonas ...
WP_013041612 1085 --------mtALKLVDKdsGelV------------------E---------NLPPIQRWLNRLLALRISVQDAIFTEYLA 1129 Sphingobium
WP_014076277 1045 --------mtGLELCDEg-GelL------------------E---------RLPPIHRWLNRILALRIATQNSIFEEFLG 1088 Sphingobium s...
WP_013833361 1093 --------mtGLKLAEEqgGglL------------------E---------RLPPIQRWLNRILALRIATQNAIFEEYIG 1137 Novosphingobium
2_pfamImport  191 --------msGLELTDQd-GvlR------------------E---------DLPPIQRWLNRILAMKIAVQNAIFDEFLT 234 
WP_015328978 1115 --------ytGLKLLNKd-GnlS------------------D---------NLPQMNTFLNRLLALKIDLQNRLFADFEQ 1158 Chamaesiphon ...
XP_005847874 1440 eatppffkymRTKLLSI--GvlEEGGe-----------GTGRILvps--akAKVKIPRFLNRLLGLPMVDQELLFQYFQD 1504
XP_001416791 1124 -----iiniiRGELVKV--GlaDEDNg-----------DGRFTLKGnktknSGLKISTFLNRLLGMPIEMQEIAFDYFTQ 1185
XP_005851273 1594 TLGAEIRAAKAEGKYFEGVSD 1614
Q1GW14        319 LVEARIDAARQAGTLDLGLET 339  Sphingopyxis alaskensis
WP_015449379  370 LIEARVEKAREAGTLDLGVET 390  Sphingomonas sp. MM-1
WP_013041612 1130 LIEARVEAAREAGTLDVGVET 1150 Sphingobium
WP_014076277 1089 LIEDRVEAARTAGTLDLGIET 1109 Sphingobium sp. SYK-6
WP_013833361 1138 LIQARVDAAREAGTLDLGVET 1158 Novosphingobium
2_pfamImport  235 LVETRVSAAKEAGTFDIGVET 255 
WP_015328978 1159 RILERIAQAKANGTFERGVQt 1179 Chamaesiphon minutus
XP_005847874 1505 TLDATVAQLKSEGKFDSGIVT 1525
XP_001416791 1186 TFEGVIKDHKQRGKYDSGVTn 1206
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